Pairwise Alignments

Query, 1044 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1047 a.a., efflux RND transporter permease subunit from Dyella japonica UNC79MFTsu3.2

 Score = 1278 bits (3308), Expect = 0.0
 Identities = 656/1036 (63%), Positives = 794/1036 (76%), Gaps = 3/1036 (0%)

Query: 1    MARFFIDRPIFAWVIALIIMLAGVLSIRTLPVSQYPSIAPPTVVISANYPGASAKIVEDS 60
            M+RFFIDRPIFAWV+A+++MLAG LSI  LP++QYP+IAPP V I+ANYPGASAK +ED+
Sbjct: 1    MSRFFIDRPIFAWVLAIVVMLAGALSIAILPIAQYPAIAPPAVAITANYPGASAKTLEDT 60

Query: 61   VTQVIEQRMKGIDHLRYIASTSDSFGNAEITLTFNAEADPDIAQVQVQNKLQGAMTLLPQ 120
            VTQVIEQ+MKG+D L Y+ASTS+S G   ITLTF    DPD AQVQVQNKL  A  LLP 
Sbjct: 61   VTQVIEQKMKGLDRLSYMASTSESSGQVTITLTFKNGTDPDTAQVQVQNKLSLATPLLPS 120

Query: 121  EVQAQGVDVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANVQDPMSRVPGVGEIQLFGA 180
            EVQ QGV V KS++ FL VL F S DGS+++ D++DYV ANVQD +SRV GVG+  LFGA
Sbjct: 121  EVQQQGVTVTKSTANFLNVLAFTSEDGSMNESDLSDYVAANVQDAISRVEGVGDTTLFGA 180

Query: 181  QYAMRIWLDPLKLTQYNLTSLEVISAIRAQNAQVSAGQLGGTPSIQGQELNATVSAQSRL 240
            QY+MR+WLDP KLT +NLT L+V +AI+AQNAQVSAGQLG  P+   Q++NAT++AQ+R+
Sbjct: 181  QYSMRVWLDPDKLTSFNLTPLDVSNAIKAQNAQVSAGQLGALPAAANQQINATITAQTRM 240

Query: 241  QTPEEFRKIILKSDTSGANVFLGDVARVELGSESYAVVSFYNGKPATGLAIKLATGANAL 300
            +T  EF  I+L++ + G++V L DVAR+EL +E+Y  V  YNGKPA GLAIKLA+GANAL
Sbjct: 241  KTAAEFEDILLRTQSDGSHVRLRDVARIELAAENYNTVGRYNGKPAAGLAIKLASGANAL 300

Query: 301  DTAEAVRDKVEELRPFFPQGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQ 360
            DT  AV  K++EL+ FFP G+ V  PYDTTPFV  SIE VV TL+EA+VLVF++MYLFLQ
Sbjct: 301  DTVRAVDSKLDELQKFFPPGMKVQKPYDTTPFVRISIEEVVRTLVEAVVLVFLVMYLFLQ 360

Query: 361  NFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420
            NFRATLIPTIAVPVVLLGTF +L+A GF+INTLTMFAMVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATLIPTIAVPVVLLGTFGVLAACGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMAL 480
            +E+GLSP EATRKSM QIT ALVG+ L L+AVFVPMAF SGSTGVIYRQFSITIVSAM L
Sbjct: 421  TEDGLSPTEATRKSMGQITSALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480

Query: 481  SVLVALILTPALCATMLKPVQKGHGHIETGFFGWFNRNFDRLTNRYESSVAGIVKRGFRV 540
            SVLVA++LTPALCAT+LKP    HG    GFFGWFNR FDR ++RY+  V  ++ R  R 
Sbjct: 481  SVLVAMVLTPALCATLLKPAHASHGLATRGFFGWFNRVFDRGSHRYQGIVRHMLARKRRY 540

Query: 541  MMIYVALVVAVGWIFMRMPTAFLPDEDQGILFTQAILPTNSTQESTLKVLDKVSDHFMAE 600
            M++Y  L+  V + F ++P  FLPDEDQG LF    LP  +T   TL V+ +V  HF+ +
Sbjct: 541  MLVYAVLLALVVFGFSKLPVGFLPDEDQGTLFGLVQLPPGATNARTLDVIKQVEHHFLVD 600

Query: 601  --EGVRSVFSVAGFSFAGQGQNMGIAFVGLKDWSEREAPGMDVQSIAGRAMGAFSQIKDA 658
              + V  +F+V GFSFAG GQN+ + FV LK W+ER      V  +  +A   F  I+DA
Sbjct: 601  QKDSVDGMFAVPGFSFAGSGQNVALLFVKLKPWNERTRKDQSVSGVTAKAWKFFGTIRDA 660

Query: 659  FVFAFVPPAVIELGTANGFDMYLQDKNGQGHDKLIAARNQLLGMAAQNPNLMGVRPNGQE 718
             VFAF PPAV ELG A GFD+ LQD+   GH  L+ ARNQLLG  +++  L+ +RPNG E
Sbjct: 661  KVFAFAPPAVSELGNATGFDLMLQDRANLGHAALMQARNQLLGELSKDKRLVALRPNGLE 720

Query: 719  DAPIYQLHIDHAKLSALGVDIANVNSVLATAWGGSYVNDFIDRGRVKKVFVQGDAQYRMQ 778
            DAP ++L ID  K  A+GV I ++N   +TAWG SYVNDF D+GRVKKV +Q DA +RM 
Sbjct: 721  DAPEFKLDIDANKAQAMGVSIDDINHTFSTAWGSSYVNDFNDKGRVKKVMLQADAPFRML 780

Query: 779  PEDLNTWYVRNNKGDMVPFSAFATGSWEYGSPRLERFNGLPAVNIQGATAPG-FSTGAAM 837
            PED++ WYVRN  GDMV F++FAT SW  GSPRLER+NG+P+V I G   PG  S+G A+
Sbjct: 781  PEDIDRWYVRNGAGDMVAFTSFATASWASGSPRLERYNGVPSVEILGMAMPGAASSGDAL 840

Query: 838  TIMEDLVKQLPPGFGIEWNGLSYEERLSGNQAPALYALSILVVFLVLAALYESWSVPFAV 897
             I+E  V +LPPGFG EW GLSY+E+ S  Q   LY LSIL+VFL LAALYESWS+PF+V
Sbjct: 841  AIVEAAVAKLPPGFGYEWTGLSYQEKASTGQTAMLYTLSILIVFLCLAALYESWSIPFSV 900

Query: 898  ILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEFYEKGAGLVE 957
            ILVVPLG+ GALLA       NDV+FQVGLLTT+GLA KNAILIVEFAKE +E G  LVE
Sbjct: 901  ILVVPLGVFGALLAAVLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKELHEGGKSLVE 960

Query: 958  ATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSSTFLGIFFV 1017
            A L A R+RLRPILMTSLAF LGVVPLA  +G G+G+QNA+G  V+GGM+S T L IFFV
Sbjct: 961  AALEAARLRLRPILMTSLAFVLGVVPLAKGSGAGAGAQNALGNVVIGGMLSGTLLAIFFV 1020

Query: 1018 PLFFVIVERIFSKRER 1033
            PLFFV+V  +F +R R
Sbjct: 1021 PLFFVLVLGLFKRRAR 1036