Pairwise Alignments

Query, 455 a.a., DNA-damage-inducible protein F (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 520 a.a., MATE efflux family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 83.6 bits (205), Expect = 1e-20
 Identities = 74/329 (22%), Positives = 145/329 (44%), Gaps = 13/329 (3%)

Query: 54  YLGGVALGSTIITLIIWLLGFLRMATTGLVAQAYGANDINAQLKLLVQGAMLATGLGIAM 113
           Y G ++  +T I +       L +A   LV+++ GA D+    +LL+  A + T + + +
Sbjct: 54  YAGSISFFTTSIGI------GLSIALGALVSRSIGAKDVELAKRLLLNSAAVTTLISLFV 107

Query: 114 ILLQVPLLSLALSFSEASVEVERYCREYFQIRIWSTPFALLNLVMLGWLLGRQQPKAAMW 173
            ++    +   ++   AS         Y  I + S PF  L + + G L      K +M 
Sbjct: 108 SVVVTCFIPELVTLVGASGHTAELAESYLYILVPSLPFICLAMALGGALRAVGDAKLSMM 167

Query: 174 QLIFANVANIILDVLFVLGFGWGVKGAALASVFADITAFSVALYMVLQQVKLIPNYPFAE 233
             +     N +LD +F+  F  G++GAALASV A I  F +A   V+ + +L+  + F+ 
Sbjct: 168 STLAGGGVNAVLDPIFIFLFAMGIEGAALASVLARIAVFIIAGRGVVVKHQLLGKFNFSY 227

Query: 234 IRAHIRFTGFGQLLRLNSDIFIRSLCLQTAFAFMTFHGAGLGDNTVAANAVLLNLLLLIS 293
             A ++      +  +     + ++      AF+T   A  GD  VA  AVL  L+ +  
Sbjct: 228 FVADLK-----PIFAIAGPAMLTNIATPIGNAFVTRAIADFGDAYVAGWAVLGRLIPVTF 282

Query: 294 YALDGIAYYAEAEVGKAYGQKRAQQLHEAVVLAWCWSAITALGFTLIFSLWGSHIIELLT 353
             +  ++      VG+ +G  R  ++ E++  A  +  +  +  +L+  L  S ++ L  
Sbjct: 283 GMIFALSGAIGPIVGQNFGAGRFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQVVSLFD 342

Query: 354 SIDEVRTTAQIYLIWLVLLPLWSFSSYLF 382
              +     + +  ++ +   ++FS  LF
Sbjct: 343 MKGDSAALIEFFCSYIAV--FFTFSGILF 369



 Score = 42.0 bits (97), Expect = 5e-08
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 19  RQLFALALPMILSNITVPLLGLVDTAVIGHLSDAYYLGGVALGSTIITLIIWLLGFLRMA 78
           + +FA+A P +L+NI  P+     T  I    DAY  G   LG  +I +   ++  L  A
Sbjct: 233 KPIFAIAGPAMLTNIATPIGNAFVTRAIADFGDAYVAGWAVLG-RLIPVTFGMIFALSGA 291

Query: 79  TTGLVAQAYGANDINAQLKLLVQGAMLATGLGIAMILLQVPLLSLALSF----SEASVEV 134
              +V Q +GA   +   + L +     T   + M LL   L S  +S      +++  +
Sbjct: 292 IGPIVGQNFGAGRFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQVVSLFDMKGDSAALI 351

Query: 135 ERYC 138
           E +C
Sbjct: 352 EFFC 355