Pairwise Alignments

Query, 301 a.a., conserved domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 290 a.a., DNA binding domain, excisionase family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  113 bits (282), Expect = 6e-30
 Identities = 91/300 (30%), Positives = 145/300 (48%), Gaps = 31/300 (10%)

Query: 9   YMSAKQVAEYLDLNEKKVYAMANDRILPATKITGKWLFPKVLIDRWVMDSCHSGMLTDRL 68
           +++ K+VA+ L + E+KVY +A    +P  +ITGK LFP+  +  W+     +  L    
Sbjct: 11  FLTTKEVADLLRVRERKVYDLAGADEIPHRRITGKLLFPREELLDWIEGDRQATALPP-- 68

Query: 69  LITGSDDPLLSMLVARLMAQVGSRELISYSATGSRLGLELLAKGYADVCTLH------W- 121
           ++TGS DP L+  V    +  G    ++    GS  GL   A   A  C LH      W 
Sbjct: 69  VLTGSHDPWLAWAVGA--SDCG----LAVLQNGSAEGLARFAAREAAFCGLHIPEDDGWN 122

Query: 122 -GSMEDRNIRHPALLKGYNNHQQWIMVHGYSRQQGLIMRPDMHHGCQEEDKVLTLPWRWV 180
            GS+  + +R   L+        W +     RQ+GL++ P +      +D       R V
Sbjct: 123 VGSVRAQGVRDCVLIG-------WAI-----RQRGLLLSPAL--AADVKDVAALRGQRVV 168

Query: 181 SRQGGAGSQQHLEQWLLKHGARL-DQLNVVLTAYSERELAGYIARGDADIGFGCQSVALE 239
            RQ GAG+   LE+ L   G  L D +     A +E E A  +A G+AD   G  ++A +
Sbjct: 169 LRQLGAGAAVLLERLLDDAGMALSDLVTGTDVARTEHEAAEAVASGEADAALGLAAMARQ 228

Query: 240 SGLSFVPLIKESFDFVMPQSIYFRRQLQQLFTMLSSGHTRQMAALLGGYDLTDCGQLLWS 299
             L FVP+++E FD ++ ++ YF    Q+L    S+    + A  LGGYD+++ G + W+
Sbjct: 229 FKLGFVPIVEERFDLLVDRAFYFSDPFQRLLQFASTPAALEKARALGGYDVSELGTVRWN 288