Pairwise Alignments

Query, 296 a.a., cation efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 483 a.a., cation diffusion facilitator family transporter (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  112 bits (280), Expect = 2e-29
 Identities = 82/295 (27%), Positives = 143/295 (48%), Gaps = 24/295 (8%)

Query: 14  ASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDH 73
           A+ +SV  A+ L  +KL+  + + S  +L+    S  D +A+ + + A+R +  P D  H
Sbjct: 16  AALSSVLAAVLLTALKLVVGVSTNSLGILSEAAHSGLDLVAAAVTWFAVRISSRPPDARH 75

Query: 74  RYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERL-LNPSPVENATLGVVVSVVAIVLTLA 132
            YGHGK E L+AL ++  ++ +   +++    RL + P  V  +  G+ V  V+IV+ ++
Sbjct: 76  PYGHGKVENLSALVETLLLLVTCGWIVWEAMHRLFVEPEIVVPSVWGLGVMGVSIVVDIS 135

Query: 133 LVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLAL-----------------VLSQY 175
              + +R     NS  +EAD+LH+ +D++ +A V++ L                 VL + 
Sbjct: 136 RSRMLRRVAKKYNSQALEADALHFSTDIWSSAVVIVGLLALLGADMLPEGSALRPVLER- 194

Query: 176 GWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHD 235
               AD + A+ +   +   +  LG R++ ALLD   D     RI+      P V+ +  
Sbjct: 195 ----ADAVAALAVCVIVVHVSLSLGRRAVDALLDGG-DAGLAGRIEDAVNAQPGVVRVER 249

Query: 236 LRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQ 290
            R R++G   F+   + +   LSL+ AH IT      V      A+V IH +P Q
Sbjct: 250 TRVRESGPHAFVDMTIIVAAGLSLDAAHEITRQAEAAVHEVAPGADVTIHFEPQQ 304



 Score = 38.9 bits (89), Expect = 2e-07
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 220 IKLIAKEDPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED 279
           ++  A  +P V   H +  R+ G+ + + FH  +     + EAH ++     R++A   +
Sbjct: 411 VQAAADMEPGVCDCHHMHVRRQGEDISLSFHCRMAPETPVTEAHRVSAALEARLRATLPE 470

Query: 280 A-EVIIHQDPV 289
              V++H +PV
Sbjct: 471 LHRVVVHMEPV 481



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 241 AGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQ 290
           A + + ++ H+EL+G + L++AH+        ++A      V  H +P Q
Sbjct: 339 APQDLMVELHVELEGRMPLSDAHARVTAFEESLRAELGPLHVATHIEPAQ 388