Pairwise Alignments

Query, 344 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 548 a.a., GGDEF domain protein from Pseudomonas syringae pv. syringae B728a

 Score =  166 bits (420), Expect = 1e-45
 Identities = 88/196 (44%), Positives = 126/196 (64%), Gaps = 2/196 (1%)

Query: 149 RELESIIQARTYELAEANNRLEKLSNTDGLTNIGNRRLFDQMLQKEWSRGQRNNTPLSLI 208
           R+++ +I A   EL  A N LE +++TD LT++ NRR FD  LQ+EW R  RN+  +++I
Sbjct: 341 RQIQQLITAEG-ELNIARNDLEIIAHTDSLTHLANRRCFDTALQQEWGRASRNDATIAII 399

Query: 209 MLDIDHFKLFNDHYGHLAGDDCLKMLANGLSQSGRRAGELVARYGGEEFVILLPNTDLQT 268
           +LDID FK +ND YGHL GDDCL+ +A  +  S  R+G++ ARYGGEEFVILLP TDL  
Sbjct: 400 LLDIDWFKQYNDTYGHLQGDDCLRQVAGLIGNSLDRSGDMAARYGGEEFVILLPETDLAG 459

Query: 269 ALDTAKHVHQLIQSLAIPHIKTNLGIVTVSVGVACLLPSDKHNA-LELVHQADTALYLAK 327
           AL  A+ +   I++  I H  + LG +++S GV  +  ++K +A    + +AD  LYLAK
Sbjct: 460 ALKLAEKIRSSIEASCIEHSSSPLGRLSISSGVVAINAAEKKDAHTAALKEADRLLYLAK 519

Query: 328 SAGRNCIRSAPPNGTQ 343
           + GRN +      G Q
Sbjct: 520 TKGRNRVEGRSIQGWQ 535