Pairwise Alignments

Query, 344 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 581 a.a., GGDEF family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  148 bits (373), Expect = 4e-40
 Identities = 91/227 (40%), Positives = 125/227 (55%), Gaps = 17/227 (7%)

Query: 118 DWKIVHSGISIPYGIAKKGEIYPMTSLEERNRELESII-QARTYELAEANNRLEKL---- 172
           +W  +  GI  P  IA +  +  +      N +L++++ +A   EL +  + LE L    
Sbjct: 342 NWHFIAKGIINPV-IATRNAMNDIV-----NEKLDTVLPKADNLELQQMVSSLETLKSYA 395

Query: 173 ------SNTDGLTNIGNRRLFDQMLQKEWSRGQRNNTPLSLIMLDIDHFKLFNDHYGHLA 226
                 S  DGLT I NRR FD  L    +R Q+ +  L LIM D+D+FK FND YGHLA
Sbjct: 396 AQVKAISEIDGLTGIHNRRYFDLKLDAALARHQKEHIHLGLIMFDLDYFKQFNDTYGHLA 455

Query: 227 GDDCLKMLANGLSQSGRRAGELVARYGGEEFVILLPNTDLQTALDTAKHVHQLIQSLAIP 286
           GD CLK + N + Q      E  ARYGGEEFV+L+   D +     A+ + + I +LAIP
Sbjct: 456 GDQCLKDVVNRIKQLLPNGNETFARYGGEEFVLLVQGYDWRALRQIAEDIRESIVTLAIP 515

Query: 287 HIKTNLGIVTVSVGVACLLPSDKHNALELVHQADTALYLAKSAGRNC 333
           H +T  GI T+S+G+A L    +  A EL+   DTALY AK  G+NC
Sbjct: 516 HRQTPQGIATLSLGIAHLPQDQRATAQELIATGDTALYRAKRRGKNC 562