Pairwise Alignments

Query, 344 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 578 a.a., diguanylate cyclase (RefSeq) from Shewanella sp. ANA-3

 Score =  152 bits (384), Expect = 2e-41
 Identities = 82/194 (42%), Positives = 119/194 (61%), Gaps = 6/194 (3%)

Query: 140 PMTSLEERNRELESIIQARTYELAEANNRLEKLSNTDGLTNIGNRRLFDQMLQKEWSRGQ 199
           P+T   E  + + S+   +TY       +++ ++ TDGLT   NRR  D  +QKE     
Sbjct: 377 PITDNLELQQMVSSLETLKTYAA-----QVKAMAETDGLTGCYNRRYLDSQIQKELIYAN 431

Query: 200 RNNTPLSLIMLDIDHFKLFNDHYGHLAGDDCLKMLANGLSQSGRRAGELVARYGGEEFVI 259
            +N PLS++M DID+FK FND YGH+ GD CLK + N      +R  +++ARYGGEEF++
Sbjct: 432 DHNMPLSIVMFDIDNFKQFNDRYGHVLGDQCLKQIVNAAKSILQRPTDILARYGGEEFML 491

Query: 260 LLPNTDLQTALDTAKHVHQLIQSLAIPH-IKTNLGIVTVSVGVACLLPSDKHNALELVHQ 318
           LLP++ L+ A   A+ + + I +L IPH   ++ G+VT+S+GVAC  PS   +   L+ Q
Sbjct: 492 LLPSSHLEDAYKIAERLRKAIIALHIPHEDSSHSGLVTISLGVACWQPSQLIDTNRLLCQ 551

Query: 319 ADTALYLAKSAGRN 332
           AD ALY AK  GRN
Sbjct: 552 ADEALYQAKQQGRN 565