Pairwise Alignments

Query, 500 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 614 a.a., ATP-binding protein from Methanococcus maripaludis JJ

 Score =  104 bits (260), Expect = 8e-27
 Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 266 AFMLYREFNRATRLASQQVSFVGQVSHELKTPLTNITLYAEMLNEMEAEE-NDQRAHYLG 324
           A  L   F+    + + +   +  VSHEL+TPLT I  Y E+L +  A + ++++  ++ 
Sbjct: 374 AHTLKTSFDELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFIS 433

Query: 325 VIISESQRLSRLIQN----VLTFTKLPQICIRQVDINQLMNQIYTAFKPVFEAKEIHLNL 380
           VI   S RL R+  N    V    K+  I   ++++ + +N I  +F    E+K I L  
Sbjct: 434 VISENSDRLKRITDNMSDLVTVDNKILDIKRDKINLKKEVNDILRSFDYFAESKNIVLLE 493

Query: 381 NINGQLSTKTDVDLVTQIISNLLSNAEKYAATGKQVDLNVEQDNDNIFIHIRDYGNGITA 440
           +++  L  K D   + Q++SNL+ NA K++    +V +   +D  NI + I D G GI  
Sbjct: 494 DVDN-LDIKGDKSKIHQVLSNLIENAIKFSKKQTKVTVMGFEDKGNIHLEITDQGPGIPK 552

Query: 441 KELKQIFQPFYRVRSSITEGVSGTGIGLTIARQLAETLSGEI 482
           + L +IF  FY++ SS    V G+G+GL + +++ E+  G I
Sbjct: 553 EHLGKIFDKFYQIDSSSKREVGGSGLGLAVCKKIVESHGGSI 594