Pairwise Alignments

Query, 500 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis JJ

 Score =  107 bits (267), Expect = 1e-27
 Identities = 70/236 (29%), Positives = 127/236 (53%), Gaps = 12/236 (5%)

Query: 270 YREFNRATRLASQQVSFVGQVSHELKTPLTNITLYAEM-LNEMEAEENDQRAHYLGVIIS 328
           Y E     +L S+ ++ V   SHEL+TPLT+I  Y E+ L+      ND +   L V   
Sbjct: 403 YNELKELDKLKSELIAIV---SHELRTPLTSIKGYVELVLDGTMGTINDSQKKCLQVADD 459

Query: 329 ESQRLSRLIQNVLTFTKLP----QICIRQVDINQLMNQIYTAFKPVFEAKEIHLNLNING 384
              RL RLI+++L  +K+     ++   +V++  ++  +    KP+   K I LN  +  
Sbjct: 460 NIVRLRRLIESMLDLSKIERGELEMYREKVNLRAIVCDVIEYLKPLATEKNIKLNKEVE- 518

Query: 385 QLSTKTDVDLVTQIISNLLSNAEKYAATGKQVDLNVEQDNDNIFIHIRDYGNGITAKELK 444
            ++ + D D +TQ+++NL+ NA K++   + + ++   ++++I + + D G GI  K+++
Sbjct: 519 DIAIEADKDRITQVLTNLIENAIKFSPANESILVSGVLEDEHIHLKVTDRGAGIPKKDME 578

Query: 445 QIFQPFYRVRSSITEGVSGTGIGLTIARQLAETLSGEINAINNE--PGMTFTLRLP 498
           +IF  FY+V SS      G+G+GL + + + E   G I  + +E   G TF + LP
Sbjct: 579 KIFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSI-WVESELGKGSTFHIILP 633