Pairwise Alignments

Query, 250 a.a., hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 244 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  402 bits (1032), Expect = e-117
 Identities = 208/251 (82%), Positives = 218/251 (86%), Gaps = 8/251 (3%)

Query: 1   MRLSPNAKGRTKAIVTVALMLSSLGLIGCSELLYRQTCVGFTKDMRYCLAPLPQHFGPAT 60
           MRLS NAKGR KAI T +L+L SLGL+GCSELLYRQTCVG  KDMRYCLAPLP  FGPAT
Sbjct: 1   MRLSLNAKGRPKAIATFSLLLISLGLMGCSELLYRQTCVGLAKDMRYCLAPLPHDFGPAT 60

Query: 61  DKTPAKPTSNQPTANQTGTDSPSLSQQGDSKAKVSS-QSFSQKVSIKVGDNTHELLTQLE 119
           +K   KP +N P            SQQGDSKA VSS QSFSQKVSIKVGDNTHELLTQLE
Sbjct: 61  NKPLNKPLTNDPKIQGN-------SQQGDSKAGVSSPQSFSQKVSIKVGDNTHELLTQLE 113

Query: 120 LEGERMTLVGLAPLGQALFTLVYDGNTLSSEQSQLLGNEFKAEYLMAMMQLIYWPEQSIR 179
           LEGERMTLVGLAPLGQALFTLVYDGNTLSSEQS LLG+EFKAEYLMAMMQLIYWPEQSI+
Sbjct: 114 LEGERMTLVGLAPLGQALFTLVYDGNTLSSEQSLLLGDEFKAEYLMAMMQLIYWPEQSIK 173

Query: 180 SHLEGGQLVTGLCDTIPCRQFYSQDTLISSSDNQIQVIQIRYQHQTDDTLWQAHINLTMP 239
           SHLEGG+LVTGLCDT+PCRQFYSQDTLIS SD+Q QVIQIRYQ QTDD LWQAHINLTMP
Sbjct: 174 SHLEGGELVTGLCDTLPCRQFYSQDTLISRSDSQTQVIQIRYQQQTDDALWQAHINLTMP 233

Query: 240 QAKFELEIQPI 250
           QAKFELEIQPI
Sbjct: 234 QAKFELEIQPI 244