Pairwise Alignments

Query, 656 a.a., outer membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 698 a.a., outer membrane protein, putative (RefSeq) from Shewanella amazonensis SB2B

 Score =  132 bits (331), Expect = 7e-35
 Identities = 144/693 (20%), Positives = 278/693 (40%), Gaps = 48/693 (6%)

Query: 1   MKLSKTTIALAMAGFCFQAYALDTTFVNKEPQLVDIKNWTCKQCSEKTMSGN-MQVGVAH 59
           + L  + I L M+G     Y L     +     V  + W CK C  K+ S + +  GVA 
Sbjct: 9   LSLIASAILLGMSGQVLAGYGLK----DANRSTVKKEAWVCKGCEIKSESTSAITAGVAW 64

Query: 60  TDSDNKRTLNSLGTTA-GLDALVDANVKMRTGSQ-QLHAKAYMTDPNIAYGQVSIGEYGL 117
            D +N    N+ GT A G    V A+++ R     +L  +A     + +  +++I + G 
Sbjct: 65  QDGENSHFANTTGTDADGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIKKPGH 124

Query: 118 YRASVFGSTKFQQDANNAYSAQYIDQNGLITNKAYRD-----DLYKQRDEFGFKVDLEFN 172
           Y+  +      + D N   +    + + L+    ++       + + +D    K++ +  
Sbjct: 125 YQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQTAGTTAGMTRLQDAHTVKLEKKRQ 184

Query: 173 LFDLN-VFNGITYKYDNAYGNKALGLLQRQAP-LKQKVQNIIKPYDTETNTLDAFV---- 226
            F+L     G ++  +  + ++     QR +  L      + KP D  T+TLDA V    
Sbjct: 185 RFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKVYWRG 244

Query: 227 -----GLSGEQWQLKLDYSGSLFSNSIDAITDFNGNQLYADAPDNESHQLAVSGFMQLDN 281
                G++G+  +   D+    F N+         N   A  PDN++  L        + 
Sbjct: 245 DRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTD-LQFFEG 303

Query: 282 TLFAMNVARGVQQQDDDLLYHSDSD-------YLAWNGKVELSNNHLSIDHRFNTQWKVK 334
              A+  AR      D+ L ++           ++ + +V+L    L+  +R + ++ V+
Sbjct: 304 AQQAIMRARFSHLTQDEPLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREFSVR 363

Query: 335 GAFESSSREHSGARYQL----------GDYGQVTRLLDKEINKYNLSTQYQFNRELKSEV 384
            +++   R++    Y            G+Y    +  D+      L  +Y+F+R+   + 
Sbjct: 364 ASYDFRDRDNKTPEYLYPLVTTDSIYRGEY--YNKGYDRTRQLLKLGAKYRFSRQWDLDT 421

Query: 385 GFELKNTVRQDQEREEVDENQFWVKADYRFNPNLKLNAKLSYLQRDGSAYEANQLTSESS 444
            +   +    +  R+ V EN        +     +++ K     R G +Y+ +  T   +
Sbjct: 422 LYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMPN 481

Query: 445 NAIIRKYYLADMEGGAFNFGANYTYQFLDLGVKTQYKYNDYIHTRLGLTESTSIGVDVYS 504
            + +R+Y+LAD +        ++ +  + L         DY  + LGL E    G  + +
Sbjct: 482 QSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNA 541

Query: 505 NVTVNNQLRIYANAGVEQIDNNQSSGFESDLNWLADTQDSFVYVGAGAIYQELFDLPLSI 564
              +   L +    G++  D  Q         W  + +D       G  +Q L D  LS+
Sbjct: 542 GYPLTEHLLLNGFLGMDWRDTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLSL 601

Query: 565 NMDYRYSESDSQSRIQPRASADYFNFT---HQFDISLNYELSKSDSLSLSYRYERYFDTD 621
            +DY YS+ +S + +    S  Y  ++   H      NY+LS + SL + + YE Y D D
Sbjct: 602 GLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANYQLSDAMSLRIDWLYENYSDMD 661

Query: 622 AANVDI--DAILGLTTLGLMDNNFNAHQVSFLY 652
             N  +  D+I  L  LG + +++ AH + F +
Sbjct: 662 WGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSF 694