Pairwise Alignments

Query, 656 a.a., outer membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 693 a.a., outer membrane protein precursor MtrB (RefSeq) from Shewanella amazonensis SB2B

 Score =  204 bits (520), Expect = 8e-57
 Identities = 180/706 (25%), Positives = 307/706 (43%), Gaps = 79/706 (11%)

Query: 1   MKLSKTTIALAMAGFCFQAYALDTTFVNKEPQLVDIKNWTCKQCSEKT-MSGNMQVGVAH 59
           M+     I LA+      A A   +  N     V    W CK C+ +T   GN+ +GV +
Sbjct: 1   MRFQLNMITLALLAASAPALAGGYSLNNANTDKVKFDAWACKGCTLETGTQGNIGIGVGY 60

Query: 60  TDSDNKRTLNSLGTTAGLDALVDANVKMRTGSQQLHAKAYMTDPNI-------AYGQVSI 112
            D+D+ R+ NS G+   +   VDA+V+  T S       Y T+ N        A   +  
Sbjct: 61  QDTDDVRSANSFGSDEEVPYKVDADVRHVTES------GYRTEFNAENLGMDNANASLKT 114

Query: 113 GEYGLYRASV-------------------FGSTKFQQDANNAYSAQYIDQNGLITNKAYR 153
           G  G Y  S+                    GS      ++  YS      +GL +   + 
Sbjct: 115 GRPGSYNVSLDYRSIKTYESDTLVSPFEGIGSGTLTLPSDWVYSGSSDGMSGLASANPFE 174

Query: 154 DDLYKQRDEFGFKVDLEFNLFDLNVFNGITYKYDNAYGNK-ALGLLQRQAPLKQKVQNII 212
             L +++   GF    E           + Y+ +   G K A G    Q+ +      + 
Sbjct: 175 ISLKREKAGLGFAYQSESAFATY-----VHYQREEKTGLKTASGSFFNQSIM------LP 223

Query: 213 KPYDTETNTLDAFVGLSGEQWQLKLDYSGSLFSNSIDAITDFNG---------NQLYADA 263
           +P D  T+T++A V L G+   L L Y+GS FSN    ++  N          +   A  
Sbjct: 224 EPVDYTTDTVEAGVKLKGDNGFLALVYNGSRFSNGYSELSFDNPFHPTFGAARSGAMALD 283

Query: 264 PDNESHQLAVSGFMQLDNTLFAMNVARGVQQQDDDLL---YHSDSDYLAWNGKVELSNNH 320
           PDN++H +++ G      +     +  G   QD+ L+   Y       A + KV++    
Sbjct: 284 PDNQAHTVSLQGLYNDGKSQLTGRLMAGQMSQDEPLVTTGYGYALPVEAVDAKVDIIGMT 343

Query: 321 LSIDHRFNTQWKVKGAFESSSREHSGARYQLGDYGQVT-----------RLLDKEINKYN 369
           L    R N   ++ G+++ S R++   + Q+ ++ Q++              D   +++ 
Sbjct: 344 LKASSRVNKDLRLSGSYDYSDRDN---KTQVEEWTQISINNVSGKVAYNTPYDHTSHRFK 400

Query: 370 LSTQYQFNRELKSEVGFELKNTVRQDQEREEVDENQFWVKADYRFNPNLKLNAKLSYLQR 429
               Y+ +R +K + G + +   R  Q+RE  +E   W +       +   + K SY  R
Sbjct: 401 AGADYRVSRGIKLDGGVDYRVDERNYQDRETTEETTGWARLRLGNFEHWDFSLKGSYGTR 460

Query: 430 DGSAYEANQLTSESSNAIIRKYYLADMEGGAFNFGANYT-YQFLDLGVKTQYKYNDYIHT 488
            GS Y+A++ TS  +NA++RKYYLAD          ++T    L L    +Y  +DY  T
Sbjct: 461 GGSEYQASEWTSSENNALLRKYYLADRNRTQAEMRVSHTPLDTLSLDFGVRYALDDYDAT 520

Query: 489 RLGLTESTSIGVDVYSNVTVNNQLRIYANAGVEQIDNNQ--SSGFESDLNWLADTQDSFV 546
           ++GLTES  +G D   +  +  +L +      + ID+ Q  SS F +  NW +D +D   
Sbjct: 521 QIGLTESKDLGYDASLSWQLTERLLLSGFYTHQTIDSAQAGSSNF-ATANWFSDIEDKVD 579

Query: 547 YVGAGAIYQELFDLPLSINMDYRYSESDSQSRIQPRAS---ADYFNFTHQFDISLNYELS 603
             G G  Y +L D  L +  DY +S+S+S ++++   +    DYF   H  ++   ++ S
Sbjct: 580 VYGLGLAYNQLMDGRLKLGADYSFSDSESTTQVRQGITGDYGDYFAKVHNLNLYAQFQAS 639

Query: 604 KSDSLSLSYRYERYFDTD-AANVDIDAILGLTTLGLMDNNFNAHQV 648
           +  ++ L YR E Y D D A ++ +D I  L + G M++++NAH V
Sbjct: 640 ERIAVRLDYRMENYRDNDEARDIAVDGIWNLVSFGSMNHDYNAHLV 685