Pairwise Alignments

Query, 656 a.a., outer membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 712 a.a., outer membrane protein, putative (RefSeq) from Shewanella sp. ANA-3

 Score =  176 bits (445), Expect = 4e-48
 Identities = 168/701 (23%), Positives = 297/701 (42%), Gaps = 70/701 (9%)

Query: 4   SKTTIALAMAGFCFQAYALDTTFVNKEPQLVDIKNWTCKQCSEKT-MSGNMQVGVAHTDS 62
           S T +A A++G    A+A            +  + W+CKQC  KT   GN+   +A+ D 
Sbjct: 14  SLTLLAWAISGVLNTAHAEGYEIQKANRSGIKSEAWSCKQCQAKTGRQGNVSATLAYNDG 73

Query: 63  DNKRTLNSLGTTA-GLDALVDANVKMRTGS-QQLHAKAYMTDPNIAYGQVSIGEYGLYRA 120
           ++ R  N  GT   GL   V AN++ +  S  Q   +A     +    +++ G+ G Y+ 
Sbjct: 74  EDSRFGNRTGTDKDGLVGAVGANMQYQAESGYQTRLEADKLGFDTGSAKLTTGQPGHYQI 133

Query: 121 SVFGSTKFQQDANNAYSAQYIDQNG------------------LITNKAYRDDLYKQRDE 162
            + G         N   + Y+  N                   L+ +     DL   RD 
Sbjct: 134 QL-GYKGLANYQYNQLKSPYLTDNDKMLLPENWVEGATTQSMPLLQSSLIEQDLSITRDR 192

Query: 163 FGFKVDLEFNLFDLNVFNG-ITYKYDNAYGNKALGLLQRQAPLKQKVQNIIKPYDTETNT 221
           F        ++   + +   + Y+++N  G K     +  A +      + +P D  T+ 
Sbjct: 193 FNLGGYYAGHISSSSRYKASVNYQHENRSGAK-----KTSANILTNSVMLAQPIDDSTDE 247

Query: 222 LDAFVGLSGEQWQLKLDYSGSLFSNSIDAI------TDFNGNQLY---ADAPDNESHQLA 272
           +DA V   G  WQ  ++   S + N   A+      T   G   +   A  PDN+++++A
Sbjct: 248 IDARVYFGGAGWQAGINSQISQYKNDHQALLWQSAYTPTFGAAYFGQNAVDPDNKAYRIA 307

Query: 273 V--SGFMQLDNTLFAMNVARGVQQQDDDLL---YHSDSDYLAWNG---KVELSNNHLSID 324
              SG     N L    +++    QD+  L    +  S  L  +    +V++ +  L   
Sbjct: 308 AEASGGQNGHNILMHAGISK--MSQDEAFLPATINGPSPVLPTDNLDAQVDILDMVLKYS 365

Query: 325 HRFNTQWKVKGAFESSSREHSGARYQLGDYGQVT-----------RLLDKEINKYNLSTQ 373
            R      V+ ++    RE+  A+    D+ QV            RL DK   +++L  +
Sbjct: 366 GRITQDLSVQASYNYQDRENKTAQL---DFPQVVTDSFHQGAEQNRLYDKRSKQFDLKGK 422

Query: 374 YQFNRELKSEVGFELKNTVRQDQEREEVDENQFWVKADYRFNPNLKLNAKLSYLQRDGSA 433
           Y+      +E G+     +  + +R+ VDE+  + K  YR++P      K   L R+GS 
Sbjct: 423 YRLTPSAYAEAGYSRDEVIYSELDRQSVDESGLFAKLSYRYSPAWSAWLKGEALDRNGSE 482

Query: 434 YEANQLTSESSNAIIRKYYLADMEGGAFNFGANYTYQF-LDLGVKTQYKYNDYIHTRLGL 492
           Y+    T   SN  +RK YLAD +        +Y     L +G       +DY HT +GL
Sbjct: 483 YDPVTSTQSPSNPWLRKSYLADRKRQKITLHTDYQSDIGLSVGASLHSIDDDYDHTLVGL 542

Query: 493 TESTSIGVDVYSNVTVNNQLRI--YANAGVEQIDNNQSSGFESDLNWLADTQDSFVYVGA 550
           T+ + +G DV +   +++ L +  Y N      D   S+ F S  +W + +++    +GA
Sbjct: 543 TQVSYLGYDVSAQYLISDNLSVNGYLNQDWRDSDQAGSNRF-STPDWYSTSEEKSTLIGA 601

Query: 551 GAIYQELFDLPLSINMDYRYSESDSQSRIQPRASA---DYFNFTHQFDISLNYELSKSDS 607
           G  YQ L D  L + +DY YS+  S + +    ++   DY++  H  +    Y+L+ S S
Sbjct: 602 GIAYQNLLDNRLDLGLDYSYSDGQSDTEVTYGINSPYGDYYSRKHNINAYAKYKLADSMS 661

Query: 608 LSLSYRYERYFDTDAANVDI--DAILGLTTLGLMDNNFNAH 646
           L   + +E+Y D +  N +   D +  + + G + +++NAH
Sbjct: 662 LRFDWLFEKYQDANWQNQNTTWDTVPNVLSFGDISHDYNAH 702