Pairwise Alignments

Query, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1258 a.a., Serine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  205 bits (521), Expect = 2e-56
 Identities = 134/436 (30%), Positives = 218/436 (50%), Gaps = 12/436 (2%)

Query: 437  EIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLDRFK 496
            +I +R+  E ++   A +DALT LPNR +F +RL+ A++   R       L+F+DLDRFK
Sbjct: 808  DISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSADRQKT-WVVLMFLDLDRFK 866

Query: 497  LINDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTIND----MNDARDV 552
             IND++GH  GDR L E ATRL  C+  +DT+AR+GGDEF +LL         +N A +V
Sbjct: 867  PINDSLGHAAGDRMLKEMATRLLGCVADDDTVARMGGDEFTLLLQPRASREMALNRAINV 926

Query: 553  AERVIRKISQSYHFGTIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYV 612
            AE+++  + + +     EF   ASIGI +S    +    +++NADTAMY AK  GK  + 
Sbjct: 927  AEQILASLVRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNFQ 986

Query: 613  IFDDSASQQKMQDIAFENDFRQALQADELQLNFLPIVDLQTRQTRSLECRLSWEHPQWGS 672
             +    +   ++ +  E+D R AL+ +E  L + P      ++    E  L W HP+ G 
Sbjct: 987  FYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRGL 1046

Query: 673  IPQEVLNKLAEQANLQVELDKYAIRLLDKCYHQLLISHGDNL---DLHLMLSSQHLKHKH 729
            +P      + E+  L V++  + I    +   QL   H   +    + + +S++      
Sbjct: 1047 VPPGDFIPVLEELGLVVDVGDWVI---TEACRQLRTWHQAKVRVPKVSVNISARQFSDGQ 1103

Query: 730  VLRGLKTTLKQTQLPLSQLWLFFNEKALVQETENHISGFELLNKLGVNLGISHYGSGHSP 789
            +   +   L+ T LP + L L   E  L++E    +     L  LG+++ +  +G+G+S 
Sbjct: 1104 LGTRIANILRSTGLPPACLELELTESILMREVSEAMQILAGLKNLGLSIAVDDFGTGYSS 1163

Query: 790  LNSLLFLPLKGLKLDANITKQL-QDEQHIKLMSAYQKAASTLELQTFVDGLQSPEQINIF 848
            LN L   P+  LK+D      L   EQ  ++  A    A +L L    +G+++ EQ++  
Sbjct: 1164 LNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFL 1223

Query: 849  HALGYRFGQGCALASP 864
               G    QG     P
Sbjct: 1224 REHGCDEVQGYLFGRP 1239