Pairwise Alignments

Query, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 714 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  237 bits (605), Expect = 2e-66
 Identities = 142/442 (32%), Positives = 236/442 (53%), Gaps = 8/442 (1%)

Query: 437 EIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLDRFK 496
           +I +R+  EA++ + A +DALT LPNR +F +R   A+ H RR+  +  AL+F+DLDRFK
Sbjct: 264 DISERKEAEARIHYLAHYDALTDLPNRVLFNDRFTQALIHARRYD-QSVALMFVDLDRFK 322

Query: 497 LINDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTINDMNDARDVAERV 556
           ++NDT+GH  GD  L + A RLR C+R  DT++R GGDEFV+LL  ++   DA  V++++
Sbjct: 323 VVNDTLGHRVGDELLKQVAERLRRCVREEDTVSRQGGDEFVVLLANLDMSADAAVVSDKI 382

Query: 557 IRKISQSYHFGTIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYVIFDD 616
           +  +++  +F   E     SIGI    +     +++++NAD AMY+AK+ G+  Y  F  
Sbjct: 383 LEALAEPMYFEGHELSVTCSIGIACYPSDGADPDTLMKNADLAMYRAKSVGRNNYQFFSP 442

Query: 617 SASQQKMQDIAFENDFRQALQADELQLNFLPIVDLQTRQTRSLECRLSWEHPQWGSIPQE 676
              Q  +  +  EN  R+AL  DE +L++LP VD  + +  SLE  + W+HP+ G +   
Sbjct: 443 ELEQGALTRLTLENAMRRALDRDEFELHYLPQVDNPSGRLLSLEALIRWQHPERGLLLPS 502

Query: 677 VLNKLAEQANLQVELDKYAIRLLDKCYHQLLISHGDNLDL---HLMLSSQHLKHKHVLRG 733
               LAE++ L + +  + +R   +   QL      NL L    + L    L+       
Sbjct: 503 QFIPLAEESGLVLPISLWVLR---RVARQLADWRRQNLTLVPVAINLCEAQLRQPDFAEA 559

Query: 734 LKTTLKQTQLPLSQLWLFFNEKALVQETENHISGFELLNKLGVNLGISHYGSGHSPLNSL 793
           L   L +  +    + L F E AL+ +TE ++     L +LGV + +  +G G+S LN L
Sbjct: 560 LGRILSEEGVEGRWIELEFTEGALMHDTERNLRVLSALKRLGVGITLDDFGVGYSNLNVL 619

Query: 794 LFLPLKGLKLDAN-ITKQLQDEQHIKLMSAYQKAASTLELQTFVDGLQSPEQINIFHALG 852
             LP+  LK+D + +T   ++E    ++ A    A ++ L+   +G+++ +Q   F A  
Sbjct: 620 RRLPVDTLKIDRSLVTDVTRNEDDAVIVDAIISMAQSMNLKVVAEGVETADQAGFFKARA 679

Query: 853 YRFGQGCALASPFALVETQQLV 874
               QG   +     VE   ++
Sbjct: 680 CAEIQGHFFSKAIGAVEVAAML 701