Pairwise Alignments

Query, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 639 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  203 bits (516), Expect = 3e-56
 Identities = 130/438 (29%), Positives = 226/438 (51%), Gaps = 12/438 (2%)

Query: 437 EIRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLDRFK 496
           +I +R+  E ++ + A HD LTGLPNR +  +RL  A+   +R    + A+LF+DLDRFK
Sbjct: 192 DITERKLHEERMRYLAHHDQLTGLPNRLLLADRLPQALTRAKRQQ-SRAAVLFVDLDRFK 250

Query: 497 LINDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTINDMNDARDVAERV 556
            IND++GH +GDR L   A RL+ C+R +DT+ R GGDEF+++L+ +     A  +  ++
Sbjct: 251 NINDSLGHNQGDRLLQSVARRLQECLRQSDTIVRQGGDEFIVILEDLQLPEQAGQIGAKL 310

Query: 557 IRKISQSYHFGTIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYVIFDD 616
           +  ++  Y     +F   ASIGI +  +  D ++++LRNADTAMY+ K++G      +  
Sbjct: 311 LETLASPYREDGYDFFLTASIGIALYPDDGDDADTLLRNADTAMYEGKSSGGNTVRFYTG 370

Query: 617 SASQQKMQDIAFENDFRQALQADELQLNFLPIVDLQTRQTRSLECRLSWEHPQWGSIPQE 676
             +++    ++ EN  R+AL+ DELQL + P +DL + +    E  L W +     IP +
Sbjct: 371 RMNERLQSRVSLENGLRRALERDELQLYYQPQIDLASGRLLGAEALLRW-NDGGRLIPPD 429

Query: 677 VLNKLAEQANLQVELDKYAI------RLLDKCYHQLLISHGDNLD-LHLMLSSQHLKHKH 729
               +AE+  L V +  + +          + + QL    G     + + LS++      
Sbjct: 430 QFIPVAEETGLIVPIGLWVLDTAIARAAAWRRHWQLRQGMGATPPRIAINLSARQFWGGG 489

Query: 730 VLRGLKTTLKQTQLPLSQLWLFFNEKALVQETENHISGFELLNKLGVNLGISHYGSGHSP 789
           +   +   L++  LP S + L   E  L+++  + +     L + GV L +  +G+G+S 
Sbjct: 490 IAEHVLLRLEREGLPPSTIELEVTESVLLRQEADCLEELRRLREAGVGLALDDFGTGYSS 549

Query: 790 LNSLLFLPLKGLKLDANITKQL---QDEQHIKLMSAYQKAASTLELQTFVDGLQSPEQIN 846
           L+ L  LP+  LK+D +    L   QD +   ++ A    A TL  +   +G++   Q+ 
Sbjct: 550 LSYLRLLPIDTLKIDKSFIFPLDEDQDGEAAAIVRAILAMAHTLGHKVVAEGVERQTQLE 609

Query: 847 IFHALGYRFGQGCALASP 864
           +   +G    QG   + P
Sbjct: 610 LLRTMGCDSFQGYLESRP 627



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 177 TNVSYGDIEVELMTFICHH--ITGVMERLKHQEQLEQAIQQRTKELSQA 223
           T+++   +  E M ++ HH  +TG+  RL   ++L QA+ +  ++ S+A
Sbjct: 191 TDITERKLHEERMRYLAHHDQLTGLPNRLLLADRLPQALTRAKRQQSRA 239