Pairwise Alignments

Query, 876 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 651 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  223 bits (569), Expect = 2e-62
 Identities = 139/432 (32%), Positives = 228/432 (52%), Gaps = 3/432 (0%)

Query: 442 RNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLDRFKLINDT 501
           R  E KL+H A HD LT LPNR +F+ RL HA+    R      A+LF+DLDRFK +ND+
Sbjct: 205 RRSEQKLLHLAHHDPLTDLPNRTLFLARLEHALSLSAREG-GSGAVLFLDLDRFKDVNDS 263

Query: 502 MGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTINDMNDARDVAERVIRKIS 561
           +GH  GDR L   A RLR C+R +DTLARLGGDEF++LL+T      A  VAE+++ +++
Sbjct: 264 LGHPTGDRLLCAVAERLRPCLRESDTLARLGGDEFLLLLETAATPERAAVVAEKLLEQLA 323

Query: 562 QSYHF-GTIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYVIFDDSASQ 620
             +      E + GASIGI +     D + +++++AD+A+YQAKA G+  +  + ++ ++
Sbjct: 324 APFRLDDRSEVYVGASIGICLYPADGDNATTLIQHADSALYQAKAAGRHTFRFYSEAQTR 383

Query: 621 QKMQDIAFENDFRQALQADELQLNFLPIVDLQTRQTRSLECRLSWEHPQWGSIPQEVLNK 680
           Q    +A E   R+ L+ +E  L + P VDL+T     +E  + W  P    +P      
Sbjct: 384 QADARLALEAALRRGLEKEEFLLYYQPQVDLRTASLEGVEALVRWRLPGGELVPPARFIP 443

Query: 681 LAEQANLQVELDKYAIRLLDKCYHQLLISHGDNLDLHLMLSSQHLKHKHVLRGLKTTLKQ 740
           LAE+  L + L ++ +R   +   Q +        + + LSS+  +   +L+ +   L +
Sbjct: 444 LAEETGLILPLGEWVLRQACRQMQQWVARGLPIRRVAVNLSSRQFRQADLLQRINAILAE 503

Query: 741 TQLPLSQLWLFFNEKALVQETENHISGFELLNKLGVNLGISHYGSGHSPLNSLLFLPLKG 800
           T L    L L   E  L+  +    +  E L  +G+ L I  +G+G+S L+ L   PL  
Sbjct: 504 TGLAPRYLELEITESLLMDNSAQVDAKLEALEAMGIRLAIDDFGTGYSSLSYLKRFPLHT 563

Query: 801 LKLDANITKQLQDEQ-HIKLMSAYQKAASTLELQTFVDGLQSPEQINIFHALGYRFGQGC 859
           LKLD +  + + D+     ++++  +    L++    +G+++ +Q  I    G R  QG 
Sbjct: 564 LKLDRSFIRDIADDPVSSNIVASIIELGQHLDMDILAEGVETDQQRGILLQNGCRTCQGY 623

Query: 860 ALASPFALVETQ 871
             + P    E +
Sbjct: 624 LFSHPLPAEELE 635