Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1092 a.a., Sensory box/GGDEF family protein from Pseudomonas fluorescens FW300-N2E2

 Score =  104 bits (260), Expect = 2e-26
 Identities = 101/418 (24%), Positives = 194/418 (46%), Gaps = 29/418 (6%)

Query: 240  DPASGLPNRQYVVSRLNGWLS----EPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLA 295
            DP + LPNR  ++ RL+  ++        GAL    LD  + ++   G+ V D  ++++ 
Sbjct: 664  DPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFLDLDHFKHINDSLGHPVGDTVLKIIT 723

Query: 296  EKLVQQLNEITPSVIARIAAFEFAFLVTDVE--HDQISKYLQTLIRTINQEISKA----G 349
             +L   +       +AR+   EF  L++ +E     +SK +QTL  T+ + +S+     G
Sbjct: 724  ARLEASVR--LEDTVARLGGDEFVVLLSGLEGSRSDVSKQVQTLANTLRELLSEPMFLDG 781

Query: 350  CKPNENFAIGVAERVGQMKV-SDILAQADNALQKALKDNK-TFHWFETTEQQIFT-REQW 406
             +     +IG+A         +D+L +AD AL +A    + T   F TT Q+  + R + 
Sbjct: 782  QRLQVTPSIGIALIPDHGSTPTDLLKRADIALYRAKDSGRNTSQMFHTTMQKAASERLRM 841

Query: 407  RDNLSHAISNKKFKFRWQPIQFCNGDGVTQRELYCQLELGDKLTHA-GQFMPYIE----L 461
              +L  A++  +F   +QP      + +   E   +    D    +  +F+  +E    +
Sbjct: 842  ETDLRLALARGEFSVHFQPQVDARDNRIIGAEALVRWHHPDLGAQSPNEFIKVLEDSGLI 901

Query: 462  LSLGS-LLDKCLIETVYEQKLLERNYEP----LAINLTHQSLSDSQFHQWL-NHFLRNAP 515
            L +G+ +LD+      ++Q + +   +P    L +N++ +    S F + + N  + +  
Sbjct: 902  LEVGTWILDEAC--DGFKQLIAKGKIDPQQFSLCVNISPRQFRQSDFVERIENSLVTHGL 959

Query: 516  QVERMCFEIPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKL 575
                +  EI E  V  +L+        ++  G  F +D FG  + S++YL+ L    +K+
Sbjct: 960  PFSLLKLEITEGIVIQNLDDTIAKMRRLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKI 1019

Query: 576  DQSFAYYDEASHN-SELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQGFI 632
            DQSF     +  N +E+ RAI+ +A+ L++ +I  G++   QL     L    YQG++
Sbjct: 1020 DQSFVRDATSDPNDAEIIRAIVAMARSLNLIMIAEGVETLEQLHFLQGLDCHLYQGYL 1077