Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 686 a.a., diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  114 bits (285), Expect = 1e-29
 Identities = 117/495 (23%), Positives = 214/495 (43%), Gaps = 34/495 (6%)

Query: 149 MSNTLIVFSLLFLVAI---FTARLGLTWIL-KPLNALSEHAKKIAARQFGPDMP----LP 200
           +++++++F L  L A+   F   L   W+L +PL  L EH  +I      PD P    LP
Sbjct: 154 VNDSVVIFILGLLRALTLGFVLFLIYQWLLTRPLTKLIEHLAQI-----NPDRPGEHKLP 208

Query: 201 -----STTELKDLVTAFNSMSAQLKHLFQSLDEEVGSLRKKNLTDPASGLPNRQYVVSRL 255
                   EL   V   N + A ++H      E   SL +    D  +GLPNRQ + S+L
Sbjct: 209 MIRGHERNELGLWVETANGLLASIEHNMHLRQEAESSLHRLTQYDSLTGLPNRQQLQSQL 268

Query: 256 NGWLSEPSSG----ALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLVQQLNEITPSVIA 311
           +  L E        A+    LD  + V+ +Y YQ  D  ++ LA++L  + +E     +A
Sbjct: 269 DHILDEARRLQRRIAVLCLGLDDFKGVNEQYSYQAGDYMLQALADRL--RASETRLGALA 326

Query: 312 RIAAFEFAFLVTDVEHD-QISKYLQTLIRTINQEISKAGCKPNENFAIGVAERVGQMKVS 370
           R+   +F  +++ +E   + ++  Q ++  +   I   G        IG+         +
Sbjct: 327 RLGGDQFVLVLSGIEQPYEAAELAQAVLDDLENPIELDGHPIRLRATIGITLYPEDGDNT 386

Query: 371 DIL---AQADNALQKALKDNKTFHWFETTEQQIFTREQWRDNLSHAISNKKFKFRWQPIQ 427
           + L   A+    L K+   N+   +  + + ++  R +   +LS A+   +F   +QP  
Sbjct: 387 EKLLQKAEQTMTLAKSRSRNRYQFYVASIDSEMRARRELEKDLSEALKRNEFHLVYQPQV 446

Query: 428 FCNGDGVTQRELYCQLELGD-KLTHAGQFMPYIE----LLSLGSLLDKCLIETVYEQKLL 482
               + +T  E   + +    KL     F+P  E    ++ +G  +       + +    
Sbjct: 447 DYRHNRITGVEALIRWKHPQGKLVPPDLFIPLAEQNGSIIEIGQWVLDQACSQLRQWHAQ 506

Query: 483 ERNYEPLAINLTHQSLSDSQFHQWLNHFL-RNAPQVERMCFEIPEAGVYSDLESCTRLCN 541
                 +A+NL+   L   Q    +   L ++    E +  E+ E G+  D+++     +
Sbjct: 507 GHTGLRVAVNLSTVQLRHPQLPAMIGELLHKHQLPAETLELEVTETGLMEDIDAAANNLH 566

Query: 542 IIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAYYDEASHNSELCRAIINVAKG 601
            +R +GA   ID FG  + S+SYL+ L    +K+D+SF         + + RA+I + K 
Sbjct: 567 SLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDIGQDEGATIVRAVIQLGKS 626

Query: 602 LDIQVIVTGIQEKAQ 616
           L + VI  G++  AQ
Sbjct: 627 LGMTVIAEGVETPAQ 641