Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 788 a.a., Mlr3171 protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  115 bits (289), Expect = 6e-30
 Identities = 105/411 (25%), Positives = 176/411 (42%), Gaps = 23/411 (5%)

Query: 240 DPASGLPNRQYVVSRLNGWLSEPSSG----ALFLAKLDWLEEVHSKYGYQVRDETIRLLA 295
           D  +GL NR+ +  RL   +  P S     AL    LD  + V+  +G+ V D+ +   A
Sbjct: 360 DALTGLINRREIERRLQRLIDPPQSPQLCHALCFVDLDHFKLVNDTFGHAVGDKFLCHFA 419

Query: 296 EKLVQQLNEITPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIRTINQEISKAGCKP-NE 354
           + +  QL       + R+   EFA L+ + +       L+ +   + Q  S  G +P   
Sbjct: 420 DVITMQLRP--GDWLGRLGGDEFAILLANTDLAHAHTLLERMHGVLGQPWSHQGGRPLTP 477

Query: 355 NFAIGVAE-RVGQMKVSDILAQADNALQKALKDNKT-FHWFETTEQQIFTREQ---WRDN 409
           + + GV E R G   V+ ++  AD A   A ++ +     F  T+  +  R     W   
Sbjct: 478 SCSFGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETDLAMARRRHDGGWISA 537

Query: 410 LSHAISNKKFKFRWQPIQFCNGDGVTQRELYCQLELGD-KLTHAGQFMPYIELLSLGSLL 468
           +  AI+  +     Q IQ  +  G  Q E+  ++   D ++   G+F+P +E   LG ++
Sbjct: 538 VQQAIAEDRLLLYAQKIQVLSDPGRVQYEVLVRMRTRDGRVLSPGEFLPAVERYGLGRMV 597

Query: 469 DKCLIETVYEQKLLERNYEPLA------INLTHQSLSDSQFHQWLNHFLRNAPQ-VERMC 521
           D  ++ET+  Q  L  N   +A      +NL+ QS++   F  ++       P  V ++C
Sbjct: 598 DAHVLETLCAQ--LSANPAHVASLDLCHVNLSAQSIAQRDFLDFVCALFERYPALVAKLC 655

Query: 522 FEIPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFA- 580
            EI E  V  DLE   R    +R  G    +D FG    S  YL+      +K+D  F  
Sbjct: 656 LEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVR 715

Query: 581 YYDEASHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQGF 631
            Y   + +     +I  V   L I+V+  G++ +A +    E      QGF
Sbjct: 716 NYAHDAVDRATVHSIAQVGLALGIEVVAEGVESEADIAGLREAGVGQVQGF 766