Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  359 bits (922), Expect = e-103
 Identities = 199/635 (31%), Positives = 348/635 (54%), Gaps = 5/635 (0%)

Query: 1   MTLFRQIYSLLFSLFLLVVASLGYVQFTETQSFLTKQMESDLNNASTSLGLMLTPALEAG 60
           MTL++Q+ + + ++F+L++ S+  ++F  T++ L +Q  S++NN   ++GL L P LE  
Sbjct: 1   MTLYKQLVAGMIAVFILLLISVFTIEFNTTRNSLEQQQRSEVNNTINTVGLALAPYLEKK 60

Query: 61  DTVAAETLVNVIFEGGYYNNIKLIWMVDGKQQEWNNPIKIDDVPQWFINLNLFKTIKKES 120
           DT+A E+++N +F+G  Y+ ++LI++ DG +   + PI+ ++VP WF  LNLF+ I    
Sbjct: 61  DTIAVESVINALFDGSSYSIVRLIFLDDGTEILRSYPIQPNNVPAWFTQLNLFEPIHDRR 120

Query: 121 TITSGWLQLAQLEITAHPGFGYHELWRIMSNTLIVFSLLFLVAIFTARLGLTWILKPLNA 180
            +TSGW+QLA++EI +HPG  Y +LW+ +    I F  + ++ +F     L   L+PL  
Sbjct: 121 VVTSGWMQLAEVEIVSHPGAAYAQLWKALIRLSIAFLAILVIGMFAVAFILKRSLRPLQL 180

Query: 181 LSEHAKKIAARQFGPDMPLPSTTELKDLVTAFNSMSAQLKHLFQSLDEEVGSLRKKNLTD 240
           +    +++A  QFG  +P P+T +L  +V   N MS Q++  F++  +E   LR++   D
Sbjct: 181 IVNKMEQVANNQFGEPLPRPNTRDLIYVVDGINKMSEQVEKAFKAQAKEAQQLRERAYLD 240

Query: 241 PASGLPNRQYVVSRLNGWLSEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLVQ 300
           P S L NR Y +S+L+GWLSE   G + + + ++++E++ + GY+  D  +R LA++L  
Sbjct: 241 PVSHLGNRAYYMSQLSGWLSESGIGGVAILQAEFIKELYEEKGYEAGDGMVRELADRLKN 300

Query: 301 QLNEITPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIRTINQEISKAGCKPNENFAIGV 360
            +  I    IARI+ +EF  ++ +++  ++    +++I  ++            N ++GV
Sbjct: 301 SIT-IKDISIARISTYEFGIIMPNMDETELKIVAESIITCVDDINPDPTGMAKANLSLGV 359

Query: 361 AERVGQMKVSDILAQADNALQKALKDNKTFHWF--ETTEQQIFTREQWRDNLSHAISNKK 418
                Q   + +L+  DNAL KA  + +  + F    T++ I  ++QW+  +  AI N  
Sbjct: 360 VSNKRQSSTTTLLSLLDNALAKAKSNPELNYGFISSDTDKIILGKQQWKTLVEEAIHNDW 419

Query: 419 FKFRWQPIQFCNGDGVTQRELYCQLELGDKLTHAGQFMPYIELLSLGSLLDKCLIETVYE 478
           F FR+Q      G     RE++   E       A QF+  +E L+   + D+ +IE V +
Sbjct: 420 FTFRYQAANSSWGK-TFHREVFSAFEKDGVRYTANQFLFALEQLNASHIFDQYVIERVIQ 478

Query: 479 QKLLERNYEPLAINLTHQSLSDSQFHQWLNHFLRNAPQVERMC-FEIPEAGVYSDLESCT 537
           Q       +PLAIN+   S+S   F +W++  L     V  +  FEIPE    ++     
Sbjct: 479 QLEKGELTDPLAINIAQGSISQPSFIRWISQTLSKHLSVANLLHFEIPEGCFVNEPHYTA 538

Query: 538 RLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAYYDEASHNSELCRAIIN 597
             CN +R+ GA FG+D++GR F S+ Y+   RP YVKLD  F ++ +         +I  
Sbjct: 539 LFCNAVRNAGADFGVDNYGRNFQSLDYINEFRPKYVKLDYLFTHHLDDERQKFTLTSISR 598

Query: 598 VAKGLDIQVIVTGIQEKAQLERFNELKTDAYQGFI 632
            A  L I  I + ++ + QL+  +E   + +QGFI
Sbjct: 599 TAHNLGITTIASRVETQTQLDFLSEHFIEVFQGFI 633