Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  109 bits (272), Expect = 5e-28
 Identities = 126/510 (24%), Positives = 230/510 (45%), Gaps = 44/510 (8%)

Query: 145 LWRIMSNTLIVFSLLFLVAIFTARLGLTWILKPLNALSEHAKKIAARQFGPDMPLPST-- 202
           L+ ++ NTL+   LL     F  +L      +P+  L      +   Q  P +PL  T  
Sbjct: 164 LFDLLRNTLLTTILLLF---FYQKLS-----RPITMLITWVNSLNDTQRSP-LPLRLTHD 214

Query: 203 TELKDLVTAFNSMSAQLKHLFQSLDEEVGSLRKKNLTDPASGLPNRQYVVSRLNGWL--- 259
            EL +L + F SM    K L +S       L +    D  +GL NR  ++ +L+  +   
Sbjct: 215 DELSELASTFQSMWKG-KELAES------KLNQLAYYDSLTGLANRSLLLQKLSDAIETA 267

Query: 260 -SEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLVQQLNEITPSVIARIAAFEF 318
            +  S+G LF   LD  + ++   G+ + D+ I+ +A ++         S  ARI   EF
Sbjct: 268 QNSHSTGVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLS--ARIGGDEF 325

Query: 319 AFLV---TDVEHDQISKYLQTLIRTINQEISKAGCKPNENFAIGVAERVGQMKVSDILAQ 375
           A L+   +  + ++++K L TLI      +         +  I V   VG   + D+L Q
Sbjct: 326 AVLIPYLSPAKAEEVAKQLLTLISN-PYAVDDHQFYCTVSIGISVFPSVGSCNI-DVLRQ 383

Query: 376 ADNALQKALKDNKTFHWFETTEQQIFTRE--QWRDNLSHAISNKKFKFRWQPI--QFCNG 431
           AD AL +A    +    F   E Q       +    L  A++ ++ +  +QP   +  N 
Sbjct: 384 ADTALYRAKASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVDEQHNI 443

Query: 432 DGVTQRELYCQLELGDKLTHAGQFMPYIE----LLSLGS-LLDKCLIETVY--EQKLLER 484
            GV     +   + G  L   G FMP  E    +L +G+ ++++   +     +Q +L  
Sbjct: 444 IGVEALIRWNHPKRG--LLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQGILPP 501

Query: 485 NYEPLAINLTHQSLSDSQFHQWLNHFLRNAPQV-ERMCFEIPEAGVYSDLESCTRLCNII 543
           ++  LAIN++    +   F + +NH LR A    E +  EI E+ +  ++ES       +
Sbjct: 502 HFRRLAINISPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKMAKL 561

Query: 544 RDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAYYDEASHNSE-LCRAIINVAKGL 602
           +++     ID FG  + S+ YL+ L    +K+D+SF        N + +   I+ +A+ L
Sbjct: 562 KESQISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKL 621

Query: 603 DIQVIVTGIQEKAQLERFNELKTDAYQGFI 632
           +++VI  G+++ ++L    +L  + +QG++
Sbjct: 622 NLEVIAEGVEDTSELAALKKLGCNQFQGYL 651