Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 554 a.a., diguanylate cyclase/phosphodiesterase from Pseudomonas syringae pv. syringae B728a

 Score =  100 bits (249), Expect = 2e-25
 Identities = 101/411 (24%), Positives = 175/411 (42%), Gaps = 12/411 (2%)

Query: 232 SLRKKNLTDPASGLPNRQYVVSRLNGWLSEPSSGALFLAKLDWLEEVHSKYGYQVRDETI 291
           SLR+    DP +G+ NRQ   + L+  LSE  S AL    LD     +   G+Q  D  I
Sbjct: 119 SLRRLVGQDPLTGIANRQGFQALLSARLSEGGSVALGHLDLDNFRRANDSLGHQAGDRLI 178

Query: 292 RLLAEKLVQQLNEITPSVIARIAAFEFAFLV-TDVEHDQISKYLQTLIRTINQEISKAGC 350
             +  +L  QL+      IAR+   EFA L+ T    ++  +  + +   + +     G 
Sbjct: 179 LQVVARLKNQLD--AGDQIARLGGDEFALLIDTRTAPERALQMAERITDVLAEPYWVDGE 236

Query: 351 KPNENFAIGVAERVGQMKVSDILAQADNALQKALK-DNKTFHWF-ETTEQQIFTREQWRD 408
                 ++G+A    Q +   ++  A  A+++A      T+H F E   +   +      
Sbjct: 237 SLLLGCSLGIAHSQAQPEADPLMWHAHIAMRQAKSMQGCTYHLFDERINRNARSLADLEG 296

Query: 409 NLSHAISNKKFKFRWQPIQFCNGDGVTQRELYCQLELGDK-LTHAGQFMPYIELLSLGSL 467
            L  A+   + +  +QP    +   +   E   +    ++ L    +F+P  E   L   
Sbjct: 297 ELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHQERGLLPPSKFVPLAEQSGLIVP 356

Query: 468 LDKCLIETVYE--QKLLERNYEPL--AINLTHQSLSDSQFHQWLNHFLRNAPQVER-MCF 522
           L   +I       Q L E+ + PL  AINL+ +   DSQ    L   +       R + F
Sbjct: 357 LGYWVIFRALRDMQALREQGFAPLHMAINLSFRQFQDSQLLPTLTRLIAEHDVDARWLEF 416

Query: 523 EIPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAYY 582
           E+ E  V    +   +  + +R  G +F +D FG  + S  +L  L  + +K+D +F   
Sbjct: 417 ELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSLPIALLKIDMTFVGQ 476

Query: 583 DE-ASHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQGFI 632
            E    N +L  A+IN+A  L+++V+  G++   QLE       +  QG++
Sbjct: 477 MELREENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSYGCNQVQGYL 527