Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  108 bits (271), Expect = 9e-28
 Identities = 106/410 (25%), Positives = 182/410 (44%), Gaps = 20/410 (4%)

Query: 240 DPASGLPNRQYVVSRLNGWL----SEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLA 295
           DP +GLPNR+ ++  LN  +       S  AL    LD+ +EV+   G+ + D  ++  A
Sbjct: 584 DPLTGLPNRRMLLEYLNTEILRIDRNHSHFALMFLDLDFFKEVNDTLGHDMGDLLLQETA 643

Query: 296 EKLVQQLNEITPSVIARIAAFEFAFLVTDVEHDQ-ISKYLQTLIRTINQEISKAGCKPNE 354
           ++L   + E    V+AR+   EF  +++ ++    + +  Q+++  I +  S        
Sbjct: 644 KRLKGCIRE--SDVVARLGGDEFTVVLSGIDSPSGVERVAQSILERIAEPYSLGDETAYI 701

Query: 355 NFAIGVAERVGQM-KVSDILAQADNALQKALKDNKT-FHWFETTEQQIFTREQWR--DNL 410
           + +IG+         +  +L  AD A+  A +  +  FH+F T   Q + R +     +L
Sbjct: 702 SASIGITIYPDDATSIEGLLKHADQAMYAAKEQGRNRFHYF-TPSMQEYARYRMALIKDL 760

Query: 411 SHAISNKKFKFRWQPIQFCNGDGVTQRELYCQLELGDK-LTHAGQFMPYIELLSLGSLLD 469
            +AI+ K+F+  +QPI   N  GV + E   +     + L   G+F+P  E   L + + 
Sbjct: 761 RNAINRKEFELFYQPIVDMNKLGVYKAEALIRWVHPQRGLVSPGEFIPVAEETGLINEIG 820

Query: 470 KCLIETVYEQKLLERNYE----PLAINLTHQSLSDS--QFHQWLNHFLRNAPQVERMCFE 523
             + E   +Q    R        ++IN +     D    F  WL            +C E
Sbjct: 821 NWVFEKAAQQSARWRTQHGVEIQISINKSPIQFRDEGDTFSDWLALLRHLELSSNAICVE 880

Query: 524 IPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAYYD 583
           I E  +       T      RD G +  +D FG  + S++YL+     Y+K+DQSF    
Sbjct: 881 ITEGLLLDASMGVTDKLLAYRDAGIQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRNL 940

Query: 584 EA-SHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQGFI 632
           E+ S    LC AII +A  L I+VI  G++ + Q +       D  QG++
Sbjct: 941 ESDSDGVALCEAIIVMAHKLGIKVIAEGVETQFQHDILASAGCDFAQGYL 990