Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 642 a.a., diguanylate cyclase/phosphodiesterase (RefSeq) from Shewanella loihica PV-4

 Score =  113 bits (283), Expect = 2e-29
 Identities = 101/441 (22%), Positives = 187/441 (42%), Gaps = 9/441 (2%)

Query: 204 ELKDLVTAFNSMSAQLKHLFQSLDEEVGSLRKKNLTDPASGLPNRQYVVSRLNGWLSEPS 263
           ELK L  A       L   F  L ++   L ++   DP +    R     +L+  L++P 
Sbjct: 187 ELKPLGKALEHCRVALHDKFDQLQQQTEQLNREAYQDPVTLFGTRPKFTEKLDA-LAKPG 245

Query: 264 S---GALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLVQQLNEITPSVIARIAAFEFAF 320
               G + + K   L  V+   G    D+ +  +A  + + L  +      RI++ +FA 
Sbjct: 246 KSRIGLMAMIKATELGHVNQSQGRAAGDDYLAGVATCIRKALQGMPNIEAFRISSADFAV 305

Query: 321 LVTDVEHDQISKYLQTLIRTINQEISKAGCKPNENFAIGVAERVGQMKVSDILAQADNAL 380
            + D+      + L+ L    ++    +  +      +   E+ G       +A A  ++
Sbjct: 306 FIPDLVLKDAQQPLEKLKAQFDEYQQGSDLESVAYIGMVPYEQGGDALSLVYIADAAVSI 365

Query: 381 QKALKDNKTFHWFETTEQQIFTREQWRDNLSHAISNKKFKFRWQPIQFCNGDGVTQRELY 440
            + L  N      + +++++     W+  +   I  +  KF  Q IQ C G     REL 
Sbjct: 366 AQTLGPNSYHVQEKLSDEELVGDSHWKLAIEDIIKRRAIKFHAQDIQPCRGADNVYRELL 425

Query: 441 CQLELGD-KLTHAGQFMPYIELLSLGSLLDKCLIETVYEQKLLERNYE-PLAINLTHQSL 498
            +    + K    G  +   E   L   LDK +I +     L    +   L IN++  S+
Sbjct: 426 SRFYSSEGKFLPTGTVIAMAERHGLSVELDKIIILSTLRLLLDTPTFTGALGINISTASV 485

Query: 499 SDSQFHQWLNH-FLRNAPQVERMCFEIPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGR 557
           +   F  WL   F+R      R+  E+ EAG+ +++    +    +   GA+  ++HFG 
Sbjct: 486 NQPAFTAWLKDIFVRQRQIASRLVLEVNEAGMQANIRQAHKFVRDMHSVGARVAVEHFGM 545

Query: 558 QFGSMSYLQGLRPSYVKLDQSFAY-YDEASHNSELCRAIINVAKGLDIQVIVTGIQEKAQ 616
            F S  + + +RP ++KLD S++   D  S+N    + I++VA+   ++VI + I+ + +
Sbjct: 546 GFTSFKFFKEVRPDFIKLDGSYSQGIDTDSNNRFFVKMIVDVARKQSVKVIASSIERQEE 605

Query: 617 LERFNELKTDAYQGF-IAPPE 636
                +L  D  QGF IA P+
Sbjct: 606 KFALEQLLVDGLQGFYIAKPK 626