Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 684 a.a., sensory box/GGDEF family protein from Marinobacter adhaerens HP15

 Score =  112 bits (281), Expect = 4e-29
 Identities = 96/406 (23%), Positives = 177/406 (43%), Gaps = 20/406 (4%)

Query: 240 DPASGLPNRQYVVSRLNGWLSEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLV 299
           DP +GL N+Q +V     W    S GAL    ++    ++ +YGY++ D  +  LA ++ 
Sbjct: 263 DPLTGLLNKQTLVEDCKLWFRSASPGALLYIDIEHFSLINQRYGYEIGDAVLIKLANRIG 322

Query: 300 QQLNEITPSVIARIAAFEFAFLVT-----DVEHDQISKYLQTLIRTINQEISKAGCKPNE 354
           + +        A    F  A  V      +   ++I +Y+ T  +    ++       N 
Sbjct: 323 RAMQRANHCARAGADTFLAAIQVNSQADAEAVAERIIEYISTPFKLRENQL-------NV 375

Query: 355 NFAIGVAERVGQMKVSDILAQ-ADNALQKALKDNKTFHWFETTEQQIFTRE-QWRDNLSH 412
              IG+A      +V ++L + A++A   A   N+    F+    ++  R+ +    L  
Sbjct: 376 RATIGIAMYPEDSEVIEVLPELAESANGFARDRNQRIGIFDFEHHKVLHRQIEIEQGLKD 435

Query: 413 AISNKKFKFRWQPIQFCNGDGVTQRELYCQLELG-DKLTHAGQFMPYIELLSLGSLLDKC 471
           AI + +     QP    +   +   E   +     +     G+F+P  E  SLG  LD  
Sbjct: 436 AIESHQLAIYLQPKYRISDKSIAGYEALVRWHHPREGFISPGEFVPIAEKSSLGLELDHY 495

Query: 472 LIETVYE----QKLLERNYEPLAINLTHQSLSDSQFHQWLNHFLRNAP-QVERMCFEIPE 526
           ++  V+E     +   R++ P+AIN+T    S   FH+ +   + +A   +E +  EI E
Sbjct: 496 VLVRVFELIASARATIRDFPPVAINITPAHFSRVDFHKLVLAGIADANIPIESVELEITE 555

Query: 527 AGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAYYDEAS 586
             V    E   +  + +R  G +  ID FG  + S++YL+ L    +K+D++F       
Sbjct: 556 GAVMERSEEARQNLDALRSQGVRIAIDDFGTGYSSLNYLRYLGIDDLKIDKTFVDEVLTE 615

Query: 587 HNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQGFI 632
               + ++II++A   DIQV+  G++   Q E   E+     QG++
Sbjct: 616 KGKIIVKSIIDIAAAHDIQVVAEGVETAQQFELLREMGCHLCQGYL 661