Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 666 a.a., diguanylate cyclase/phosphodiesterase from Marinobacter adhaerens HP15

 Score =  179 bits (454), Expect = 4e-49
 Identities = 151/634 (23%), Positives = 278/634 (43%), Gaps = 21/634 (3%)

Query: 9   SLLFSLFLLV-VASLGYVQFTETQSFLTKQMESDLNNASTSLGLMLTPALEAGDTVAAET 67
           SLL +L + V + S GY +      +++ Q+     + +T++GL L+ A++  D VA+ +
Sbjct: 28  SLLVTLLVAVFITSYGYFR-----DYVSDQLAGHARDGATAIGLSLSNAIDGRDPVASAS 82

Query: 68  LVNVIFEGGYYNNIKLI----WMVDGKQQEWNNPIKIDDVPQWFINLNLFKTIKKESTIT 123
           L++ +F+ G Y ++  +      V G+    N       VP WF +L        E+ + 
Sbjct: 83  LIDAVFDSGRYLSVSYLNHQGEQVAGRAMTLNKVA----VPAWFRDLADLPLPVAEAEVV 138

Query: 124 SGWLQLAQLEITAHPGFGYHELWRIMSNTLIVFSLLFLVAIFTARLGLTWILKPLNALSE 183
            GW +L  +++ +HPG  Y +LWRI        +++  + +F   L L   L+PL+AL +
Sbjct: 139 RGWSRLGTVQVISHPGRAYEDLWRITVGLTASTAVIGGIGLFAVFLLLRRTLRPLHALED 198

Query: 184 HAKKIAARQFGPDMPLPSTTELKDLVTAFNSMSAQLKHLFQSLDEEVGSLRKKNLTDPAS 243
            AK +  R F   + + ST E+  +  A N M+  L  LF+   + +  LR+ N  D  +
Sbjct: 199 QAKALGQRDFRRRVSIKSTREINQVTDAMNRMADDLGQLFEGQAKLIQHLRRVNNEDSVT 258

Query: 244 GLPNRQYVVSRLNGWL---SEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLVQ 300
           GL +R     RL   +    + + G L L +L      +  YG    D  +  +A  + +
Sbjct: 259 GLASRSAFDQRLKVEVESEEKAAPGILMLIQLADFSGYNQAYGRSEADRLLLRVATWIGE 318

Query: 301 QLNEITPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIRTINQEISKAGCKPNENFAIGV 360
            + +   S   R    EFA  +          + + L+  ++   +      + +   G+
Sbjct: 319 FVMQHAGSFAGRRTGAEFAIFLPGAMPADAGVWCRQLVTDLDGVYADLASPMDTSVHAGL 378

Query: 361 AERVGQMKVSDILAQADNALQKA-LKDNKTFHWFETTEQQIFTREQWRDNLSHAISNKKF 419
           A  +      D++A AD AL+ A  +     H  +  +      E WR  +S AI  +  
Sbjct: 379 ARTLEGRGARDLMAAADEALRAAQSRAESGCHLADPEKDGHHNLETWRVIISQAIRRQAL 438

Query: 420 KFRWQPIQFCNGDGVTQRELYCQLELGDKLTHAGQFMPYIELLSLGSLLDKCLIETVYEQ 479
               QP+           +++ +++  +    AG F+P  E   L S LD+ L++ V + 
Sbjct: 439 SLWLQPMVNEGRLMPVYHQVFSRIDSAEGALKAGTFVPMAERFGLISELDRLLVQRVLD- 497

Query: 480 KLLERNYEPLAINLTHQSLSDSQFHQWLNHFLRNAPQVER-MCFEIPEAGVYSDLESCTR 538
           +L +   +PLA++L + S++   F   L   LR A    R +   I E  ++    +   
Sbjct: 498 RLKQSPDQPLAVSLGNASVASEAFRTDLLDQLRQAGSPARNLWIGISEQAIHHHRTAVGL 557

Query: 539 LCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAY-YDEASHNSELCRAIIN 597
           L   +   G    +D FG      SYL+ LR   +++D SF +  D    N     +++ 
Sbjct: 558 LVRALGRLGVPVLVDRFGVGGVPFSYLRNLRFQALRIDNSFIHNIDTHEDNRFYLESVVA 617

Query: 598 VAKGLDIQVIVTGIQEKAQLERFNELKTDAYQGF 631
           +A    ++V  TG++  A+     +L  D   G+
Sbjct: 618 IAHSRGVKVFATGVETAAEYSVLCKLGIDGAMGY 651