Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 534 a.a., hypothetical protein from Burkholderia phytofirmans PsJN

 Score =  106 bits (264), Expect = 3e-27
 Identities = 101/435 (23%), Positives = 189/435 (43%), Gaps = 50/435 (11%)

Query: 233 LRKKNLTDPASGLPNRQYVVSRLNGWLSEPSSGA--LFLAKLDWLEEVHSKYGYQVRDET 290
           L ++   D  +GL NR+ ++ RLN  + E ++ +  L    LD  ++++  +G+   DE 
Sbjct: 108 LSRQATHDELTGLINRRELLLRLNRLIDEGAADSVDLLFIDLDRFKDINDSFGHAAGDEV 167

Query: 291 IRLLAEKLVQQLNEITPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIRTINQEISKAGC 350
           +R++ E+L   L E   +  +RI   EF   + D    +  +  + +I  + + +     
Sbjct: 168 LRVVGERLSDLLTERIHA--SRIGGDEFVIFLVDAPEGEAVRVAREVIVRMREPVQTPSV 225

Query: 351 KPNENFAIGVAER-VGQMKVSDILAQADNALQKALKDNKTFHWFETTE--QQIFTREQWR 407
           +     +IGVA   V      ++L  AD A+  A +   +  W    E  Q++  R + R
Sbjct: 226 RAPVGASIGVARYPVSASDAGELLRNADTAMYHAKRAGGSQVWSFGKEDAQRLAHRLRLR 285

Query: 408 DNLSHAISNKKFKFRWQPIQFCNGDGVTQRELYCQLELGDKLTHAGQFM-----PYIELL 462
            +L  A ++ +F+  +QP                QL+LG    +  + +     P + LL
Sbjct: 286 ADLESASASHQFELHYQP----------------QLDLGTGRVYGAEALLRWNHPKLGLL 329

Query: 463 SLGSLLDKCLIETVYE---QKLLERNYEP-------------LAINLTHQSLSDSQFHQW 506
           + G  LD  L    YE   + L+ R +               +A+NL+  ++ +      
Sbjct: 330 TPGDFLDVLLESPAYEATGEWLIRRAFRQAAQWQAPDHAPFKIAVNLSATTIQNCDLAAL 389

Query: 507 LNHFLR-NAPQVERMCFEIPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYL 565
           ++     +      +  E+ E  V SD  + +R  + +R  G    +D FG  + S++YL
Sbjct: 390 VSEAAEASGVSASVLEIEVTETVVMSDFVAASRSLSAVRRLGVTVSLDDFGTGYSSLAYL 449

Query: 566 QGLRPSYVKLDQSFAY---YDEASHNSE-LCRAIINVAKGLDIQVIVTGIQEKAQLERFN 621
             L    +K+D+SF      +E  H +  +  A++ +A  L +  +  G++ + QL    
Sbjct: 450 TQLPVDRIKIDKSFVQRLTVEETCHQARAMVEAMVTLAHALGMGTVAEGVETETQLALVR 509

Query: 622 ELKTDAYQG-FIAPP 635
           EL  DA QG FI  P
Sbjct: 510 ELGCDAAQGYFIGQP 524