Pairwise Alignments

Query, 471 a.a., agglutination protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 484 a.a., type I secretion outer membrane protein, TolC family from Pseudomonas stutzeri RCH2

 Score =  107 bits (267), Expect = 9e-28
 Identities = 106/441 (24%), Positives = 200/441 (45%), Gaps = 36/441 (8%)

Query: 23  LPLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTVDLTGGYGYEQT 82
           +PL++++  L       ++ N DL  A  +F+AR+E V QA AG +P  +L+ G     T
Sbjct: 25  VPLASKTD-LVSVYQQAVNNNADLAAARAQFRARQEIVPQARAGLLP--NLSAGAELSDT 81

Query: 83  DSVSTRRRKNVGDVD-SNGVAELNRG--EFGISLKQMLF--DGFYTSSEVDRYSFEASAD 137
           ++          DVD S G   L+R    +  +L Q +F  D ++        S E +A 
Sbjct: 82  ET----------DVDTSRGSTSLSRSGTAYQATLSQPIFRADRWFQLKAAQAVS-EQAAI 130

Query: 138 QWALLAAAEDMALDVSKAYLNYLRTDEVLKLAEKNLNSHKEIYDQIKQRTDSGLGSTADL 197
           ++++  A +D+ L  +++Y   LR  + L   +    + K   DQ  +R + GL    D+
Sbjct: 131 EYSI--AEQDLILQSAQSYFAVLRAQDNLAAVKAEEAAFKRQLDQANERFEVGLSDKTDV 188

Query: 198 SQISGRLARANANVISARNNLLDAKAQFVRVVAADPVDLI---QPVPDADMLPKDLNSSI 254
            +       A AN   A+  + DA      +   + + L      +P     P +  + +
Sbjct: 189 LEAQAGFDTARANRSIAQRQVDDAFQALFTLTNREYIALEGIRHTLPVLAPAPNEAKAWV 248

Query: 255 ADAEKNHPILKSAANDIRAAENERSSTQANYYPQVSLELNGSWNNDVGGEDGVSAIASQN 314
             A + +  L +    + AAE      ++ + P  +L+   S+    G  D +    SQN
Sbjct: 249 DTATRQNLNLLAVNYAVTAAEETLRQRRSGHAP--TLDAVASYRK--GDNDSLGFSNSQN 304

Query: 315 VGG-----YSNDIVAM---VRVKYNLFAGGKDLAREKESAYKLSEAKEIRQRAQREVVEG 366
           + G     Y+ D+      +++   L++GG   ++ +E+ Y+LS++++ R+  +R+VVE 
Sbjct: 305 IPGFDMPRYTGDVEQRSIGLQLNIPLYSGGLTTSQSREAYYQLSQSEQQRESLRRQVVES 364

Query: 367 VNLAWNAYEMLAPQKQYIRDHVIAAKDTQSAYAQQFNLGQRSLLDLLDTENELFEARKDY 426
                 A      Q +  R  +I+ +    A    + +G R+++D+LDT+  L+ A +DY
Sbjct: 365 TRNLHRAVNTDIEQVEARRQSIISNQSALEATEIGYQVGTRNIVDVLDTQRRLYGAVRDY 424

Query: 427 LQAEYDETIAKYRVLNSTGRL 447
             A YD  +   R+  + G L
Sbjct: 425 NNARYDYILDNLRLKQAAGTL 445



 Score = 38.9 bits (89), Expect = 4e-07
 Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 18/214 (8%)

Query: 55  AREEQVNQAIAGYMPTVDLTGGYGYEQTDSVSTRRRKNVGDVDS-NGVAELNRGEFGISL 113
           A EE + Q  +G+ PT+D    Y     DS+     +N+   D      ++ +   G+ L
Sbjct: 267 AAEETLRQRRSGHAPTLDAVASYRKGDNDSLGFSNSQNIPGFDMPRYTGDVEQRSIGLQL 326

Query: 114 KQMLFDGFYTSSEVDRYSFEASADQWALLAAAEDMALDVSKAYLNYLR---TD-EVLKLA 169
              L+ G  T+S+     ++ S  +       E +   V ++  N  R   TD E ++  
Sbjct: 327 NIPLYSGGLTTSQSREAYYQLSQSE----QQRESLRRQVVESTRNLHRAVNTDIEQVEAR 382

Query: 170 EKNLNSHKEIYDQIKQRTDSGLGSTADLSQISGRLARANANVISARNN-LLDAKAQFVRV 228
            +++ S++   +  +     G  +  D+     RL  A  +  +AR + +LD        
Sbjct: 383 RQSIISNQSALEATEIGYQVGTRNIVDVLDTQRRLYGAVRDYNNARYDYILDNLRLKQAA 442

Query: 229 VAADPVDLIQPV--------PDADMLPKDLNSSI 254
              +P DL Q          PD D LP DL  +I
Sbjct: 443 GTLNPDDLQQLAAYLKPDYNPDTDFLPPDLPQTI 476