Pairwise Alignments

Query, 471 a.a., agglutination protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 460 a.a., type I secretion outer membrane protein, TolC family from Marinobacter adhaerens HP15

 Score =  100 bits (250), Expect = 8e-26
 Identities = 102/441 (23%), Positives = 196/441 (44%), Gaps = 29/441 (6%)

Query: 17  LLSAILLPLSAQ---SQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTVDL 73
           LLS ++  ++AQ   S  L +     L  +  +  A   F+A++   + + +  +P +  
Sbjct: 5   LLSGLIGLMAAQPALSMDLVETYEKALSYDSGIAAARASFEAQQAASDVSQSALLPQIGA 64

Query: 74  TGGYGYEQTDSVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLF--DGFYTSSEVDRYS 131
            G   Y   D          G    N   ELN   +G+ L Q LF  D ++   +  ++ 
Sbjct: 65  FGEGNYIDVD----------GPSQDNSYQELN---YGVQLTQPLFRADAWFRY-DASKFQ 110

Query: 132 FEASADQWALLAAAEDMALDVSKAYLNYLRTDEVLKLAEKNLNSHKEIYDQIKQRTDSGL 191
            E++  ++ L  A + + LDV+ AY N LR  + +  A     + +  Y+Q ++R D GL
Sbjct: 111 TESARAEYNL--AQQQLILDVATAYFNVLRARDTVTTARATEAAIQRQYEQAQERFDVGL 168

Query: 192 GSTADLSQISGRLARANANVISARNNLLDAKAQFVRVVA--ADPVD-LIQPVPDADMLPK 248
            +  ++ +       + +  I+A N L  A+ Q  R+    A+ +D L Q  P     P 
Sbjct: 169 IAITEVYEARASYDDSKSQRIAAENQLNVAREQLARLTGEYAEELDNLRQNFPLGRPDPM 228

Query: 249 DLNSSIADAEKNHPILKSAANDIRAAENERSSTQANYYPQVSLELNGSW-NNDVGGEDGV 307
           D ++  A A + +  ++SA  ++ A E      +A +YP  +L+LN S+   D+ G DG 
Sbjct: 229 DPSAWEATALEQNWSIQSALFELNANEAGLREAKAGHYP--TLDLNASYGKTDLNGIDGA 286

Query: 308 SA-IASQNVGGYSNDIVAMVRVKYNLFAGGKDLAREKESAYKLSEAKEIRQRAQREVVEG 366
           +A I SQ  G  +   + +  +   L++GG   A  ++    ++ A++     +R+V   
Sbjct: 287 NAPITSQQDGTTTRGTIGLT-LNVPLYSGGGTQAGVRQQRSLVTVAEQSLNTVRRDVRVN 345

Query: 367 VNLAWNAYEMLAPQKQYIRDHVIAAKDTQSAYAQQFNLGQRSLLDLLDTENELFEARKDY 426
               +            +   +++ +    A    + +G R+++++LD E   + A +DY
Sbjct: 346 TRSLFLTVNNNVETASALEQTIVSRRSALDATRAGYEVGTRNIVEVLDAERAYYVALRDY 405

Query: 427 LQAEYDETIAKYRVLNSTGRL 447
             A YD  I   ++  + G L
Sbjct: 406 ANARYDYVINSLQLKQAAGTL 426