Pairwise Alignments

Query, 471 a.a., agglutination protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 448 a.a., putative outer membrane protein TolC (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 97/429 (22%), Positives = 179/429 (41%), Gaps = 21/429 (4%)

Query: 31  TLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTVDLTGGYGYEQTDSVSTRRR 90
           +L   +   L  N  LR+  N  +  +       AGY+PT+D + GY     D++ T+ R
Sbjct: 33  SLRDCLEEGLQNNYSLRIVHNEEQISKNNATLGNAGYLPTLDFSAGYT-GNLDNIETKAR 91

Query: 91  KNVGDVDSNGVAELNRGEFGISLKQMLFDGFYTSSEVDRYSFEASADQWALLAAAEDMAL 150
                  +NGV +      G++L   +FDGF  S+   +        +     A ED   
Sbjct: 92  ATGEVTKNNGVYD-QTVNVGLNLNWTIFDGFNISTTYKQLKELERQGETNTRIAIEDFIA 150

Query: 151 DVSKAYLNYLRTDEVLKLAEKNLNSHKEIYDQIKQRTDSGLGSTADLSQISGRLARANAN 210
           D++  Y N+++    LK     ++  KE     +     G  S  D  Q        +A 
Sbjct: 151 DLASEYYNFIQQKIRLKNFHYAMSLSKERLRIAEASHLVGKFSGLDYQQAKVDFNADSAQ 210

Query: 211 VISARNNLLDAKAQFVRVVAADPVDLIQPVPDA------DMLPKDLNSSIADAEKNHPIL 264
            I  +  L  ++ Q   ++A + V+ I  + D+      D+L  DL +  A    N  +L
Sbjct: 211 YIKQQELLHSSRIQLNELMANNNVNQIIVIKDSTIDVHSDLLFDDLWN--ATLSTNASLL 268

Query: 265 KSAANDIRAAENERSSTQANYYPQVSLELNGSWNNDVGGEDGVSAIASQNVGGYSNDIVA 324
           K+  N + A  + +     NY     L+LN  +       D ++A + +   G++    A
Sbjct: 269 KADQNTVLAQLDYKKINSRNY---PYLKLNTGYGYTFNKYD-INANSRRGNLGFN----A 320

Query: 325 MVRVKYNLFAGGKDLAREKESAYKLSEAKEI-RQRAQREVVEGVNLAWNAYEMLAPQKQY 383
            V V +N+F G +   REK +A    + + + RQ  +  +   ++  W AY         
Sbjct: 321 GVTVGFNIFDGNR--RREKRNATLAFKNRRLERQELELALRSDLSNLWQAYRNNLQLLNL 378

Query: 384 IRDHVIAAKDTQSAYAQQFNLGQRSLLDLLDTENELFEARKDYLQAEYDETIAKYRVLNS 443
            R +++ AKD       ++  G  S  ++ + +  L +A +  L AEY+  + +  +L  
Sbjct: 379 ERQNLVTAKDNHDIAMDRYIQGDLSGFEVREAQKSLLDAEERILSAEYNTKLCEISLLQI 438

Query: 444 TGRLLDSLK 452
           +G++   L+
Sbjct: 439 SGKITKYLE 447