Pairwise Alignments

Query, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 460 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  736 bits (1899), Expect = 0.0
 Identities = 369/460 (80%), Positives = 416/460 (90%)

Query: 25  MSKNLTANDLDMVDDVYGAMMTDAPSGHRLIIWALAAMVACFLLWAGFAELDTVTTGSGK 84
           MSK LTA DL+MVDDVYGAMMTDAP+ HRL IWAL +++  FL+WA FAELD VT G+GK
Sbjct: 1   MSKALTARDLEMVDDVYGAMMTDAPTSHRLTIWALTSLIFAFLIWAYFAELDQVTVGTGK 60

Query: 85  VIPSSQVQVIQSLDGGIMQELFVRDGDLVTKGQPLVRIDDTRFRSDFAQQEQEVFGLKTN 144
           VIPSSQ+QVIQSLDGG++QELFVR+G++V KG+PL RIDDTRFRSDFAQQE+EVF L+ N
Sbjct: 61  VIPSSQIQVIQSLDGGVLQELFVREGNIVAKGEPLARIDDTRFRSDFAQQEEEVFSLQAN 120

Query: 145 AIRMRAELDSILISDMTSDWREQVKITKKDLVFPDSIIQAEPALVKRQQEEYSGRLDNLS 204
            IRMR EL+SI +SDM SDWREQV+I K++L+FPD++   +  LV RQQ EY+GRLDNL 
Sbjct: 121 VIRMRTELNSITVSDMASDWREQVRIVKQELIFPDALSAQKAELVARQQAEYNGRLDNLE 180

Query: 205 NQLEILVRQIQQRQQEIDDLASKTTTLTTSMQLISRELELTRPLAKKGIVPEVELLKLER 264
           NQLEIL RQIQQRQQE ++L +K  T+TTS QLISRELELTRPLA+KGIVPEVELLKLER
Sbjct: 181 NQLEILARQIQQRQQENEELTTKIATMTTSFQLISRELELTRPLAQKGIVPEVELLKLER 240

Query: 265 AVNDAQGELNSLRLLRPKLKAALDEAILKRREAVFVYAADLRAQLNETQTRLSRMNEAQV 324
            VN+ QGEL ++R LRPK+KA LDEAILKRREAVFV+AAD RAQLN+ QTRLSRM+EAQV
Sbjct: 241 TVNELQGELKAMRQLRPKIKATLDEAILKRREAVFVFAADTRAQLNDMQTRLSRMSEAQV 300

Query: 325 GAQDKVSKAIITSPVNGTIKTVHINTLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAF 384
           GAQDKVSKA+ITSPVNGT+KTVHINTLGGVVQPGVDI+EIVPSEDQLLIE KI PKDIAF
Sbjct: 301 GAQDKVSKAVITSPVNGTVKTVHINTLGGVVQPGVDIMEIVPSEDQLLIEAKITPKDIAF 360

Query: 385 LHTGLPAVVKVTAYDFTRYGGLKGTVEHISADTSQDEEGNSFYLIKVRTEESSLIKDDGT 444
           LH GLPAVVKVTAYDFTRYGGL+GTVEHISADT+QDEEGNSFYLI+VRT ESSL+KDDGT
Sbjct: 361 LHVGLPAVVKVTAYDFTRYGGLQGTVEHISADTTQDEEGNSFYLIRVRTAESSLVKDDGT 420

Query: 445 QMPIIPGMLTTVDVITGQRSILEYILNPILRAKDTALRER 484
           +MPIIPGMLT+VDVITGQRSILEYILNPILRAKDTALRER
Sbjct: 421 EMPIIPGMLTSVDVITGQRSILEYILNPILRAKDTALRER 460