Pairwise Alignments

Query, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  186 bits (472), Expect = 2e-51
 Identities = 115/408 (28%), Positives = 213/408 (52%), Gaps = 16/408 (3%)

Query: 68  LWAGFAELDTVTTGSGKVIPSSQVQVIQSLDGGIMQELFVRDGDLVTKGQPLVRIDDTRF 127
           LWA  A L +     G ++  S  + +Q L+GGI++E+ V++GD V +G PL+R++ T+ 
Sbjct: 88  LWAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIKEILVKEGDRVHQGDPLIRLETTQA 147

Query: 128 RSDFAQQEQEVFGLKTNAIRMRAELDSILISDMTSDWREQVKIT-KKDLVFPDSIIQAEP 186
            +  A    +    +    R+ AE D            EQ  IT   DL+    +     
Sbjct: 148 LASAAVVSNQFETYQALEARLVAERD------------EQKTITFPPDLIAVAKLKPETA 195

Query: 187 ALVKRQQEEYSGRLDNLSNQLEILVRQIQQRQQEIDDLASKTTTLTTSMQLISRELELTR 246
            +++ QQ+++  R  ++  Q+ IL ++I Q +QEI+ L  +  +    +++   E+   R
Sbjct: 196 EILQAQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLKVQRQSKKRQLEIFQDEIVGLR 255

Query: 247 PLAKKGIVPEVELLKLERAVNDAQGELNSLRLLRPKLKAALDEAILKRREAVFVYAADLR 306
            L  KG  P   +L +ER +   +GE+ +      + + A+ EA L+  +    +  D+ 
Sbjct: 256 ELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAVGEAELQIIQTRQQFREDVV 315

Query: 307 AQLNETQTRLSRMNEAQVGAQDKVSKAIITSPVNGTIKTVHINTLGGVVQPGVDIIEIVP 366
            QL E QT+LS + E    A D +S+ ++ +   G I+ + ++TLGG+++PG  ++EIVP
Sbjct: 316 GQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLAVHTLGGIIKPGETLMEIVP 375

Query: 367 SEDQLLIETKILPKDIAFLHTGLPAVVKVTAYDFTRYGGLKGTVEHISADTSQDE-EGNS 425
            +D+L+IE +I P+DI  +  G+   V+ +A++      + G +  +SAD   +E + +S
Sbjct: 376 EDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIIDGVLSQVSADRFVNERDSSS 435

Query: 426 FYLIKVRTEESSLIKDDGTQMPIIPGMLTTVDVITGQRSILEYILNPI 473
           +Y  ++   +  L K  G  + +  GM   V + TG+R++L Y L P+
Sbjct: 436 YYKARIEVSDEELAKLGG--LALRAGMPVDVMIKTGERTVLHYFLKPL 481