Pairwise Alignments

Query, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 467 a.a., putative type I secretion membrane fusion protein from Phaeobacter inhibens DSM 17395

 Score =  161 bits (407), Expect = 5e-44
 Identities = 120/475 (25%), Positives = 224/475 (47%), Gaps = 35/475 (7%)

Query: 20  TEALKMSKNLTANDLDMVDDVYGAMMTDAPSGHRLIIWALAAMVACF---LLWAGFAELD 76
           T  ++MS+       D++ D +    T      +L++W L      F   + WA  AE+ 
Sbjct: 14  TSEIEMSRGFQ----DLMPDGFALPRTPPTRVRQLVMWMLVCGFGLFGGLVFWATKAEMT 69

Query: 77  TVTTGSGKVIPSSQVQVIQSLDGGIMQELFVRDGDLVTKGQPLVRIDDTRFRSDFAQQEQ 136
           +     G+   +     +Q L+GGI++E+ V +GD+V +G  +  +D  R R+  A    
Sbjct: 70  SAVVAPGQFTVAGDRLSVQHLEGGIVREINVAEGDMVAEGDVIAVLDGRRMRASRAILTS 129

Query: 137 EVFGLKTNAIRMRAELDSILISDMTSDWREQVKITKKDLVFPDSIIQAEPALVKR---QQ 193
           ++  L     R++AEL             +Q+++  +     D +I  +P LV     Q+
Sbjct: 130 QMASLLAQQARLQAELAEA----------DQIEVPAE----LDQLIAEDPQLVSLFEVQR 175

Query: 194 EEYSGRLDNLSNQLEILVRQIQQRQQEIDDLASKTTTLTTSMQLISRELELTRPLAKKGI 253
           + ++        Q++IL  +I Q  ++++   ++ T +   + LI  E+     L +KG+
Sbjct: 176 DVFTSNRALYEGQVQILRDRISQLGKQLNGRQARITAIEDQLTLIKGEVADLHKLYEKGL 235

Query: 254 VPEVELLKLERAVNDAQGELNSLRLLRPKLKAALDEAILKRREAVFVYAAD----LRAQL 309
           VP+  L   +       G   +L      L+    E I +  E +     D    + ++ 
Sbjct: 236 VPKTRLSDRQLQHTGLMGTFGALESDSENLQ----ERIAETEERILQVHRDTVNRISSET 291

Query: 310 NETQTRLSRMNEAQVGAQDKVSKAIITSPVNGTIKTVHINTLGGVVQPGVDIIEIVPSED 369
              Q R+  + +    A+D + +  I +P  G +  + INTLG V+ PG +++E+VPS  
Sbjct: 292 QLVQERILDLRQRLDAAEDVLERQTILAPRAGRVVELSINTLGQVLNPGQNVLELVPSGS 351

Query: 370 QLLIETKILPKDIAFLHTGLPAVVKVTAYDFTRYGGLKGTVEHISADTSQD-EEGNSFYL 428
            L++ET++ P DI  + TG  A V++TAY F     ++G V  ++AD+  D   G  +Y 
Sbjct: 352 DLIVETRVSPTDIDEVVTGGQARVQLTAYSFRSTPPVRGEVVMVAADSIADLNSGIPYYR 411

Query: 429 IKVRTEESSLIKDDGTQMPIIPGMLTTVDVITGQRSILEYILNPILRAKDTALRE 483
           + +R     L      +   +PGM     + TG++++ +Y+L+P+LR+   ALRE
Sbjct: 412 VHIRIPPEELAALPNVK--TLPGMPAQAMIETGRQTLADYLLSPVLRSMSNALRE 464