Pairwise Alignments

Query, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella sp. ANA-3

 Score =  860 bits (2221), Expect = 0.0
 Identities = 446/460 (96%), Positives = 456/460 (99%)

Query: 25  MSKNLTANDLDMVDDVYGAMMTDAPSGHRLIIWALAAMVACFLLWAGFAELDTVTTGSGK 84
           MSK+LTANDLDMVDDVYGA+MTDAPSGHRLIIWALAAMVACFLLWAGFA+LD VTTGSGK
Sbjct: 1   MSKHLTANDLDMVDDVYGAIMTDAPSGHRLIIWALAAMVACFLLWAGFAKLDKVTTGSGK 60

Query: 85  VIPSSQVQVIQSLDGGIMQELFVRDGDLVTKGQPLVRIDDTRFRSDFAQQEQEVFGLKTN 144
           VIPSSQVQVIQSLDGGIMQELFVR+GD+VTKGQPLVRIDDTRFRSDFAQQEQEV GLKTN
Sbjct: 61  VIPSSQVQVIQSLDGGIMQELFVREGDIVTKGQPLVRIDDTRFRSDFAQQEQEVLGLKTN 120

Query: 145 AIRMRAELDSILISDMTSDWREQVKITKKDLVFPDSIIQAEPALVKRQQEEYSGRLDNLS 204
           AIRMRAELDSILISDMTSDWREQVKITKK LVFPDSI +AEPALV+RQQEEY+GRLDNLS
Sbjct: 121 AIRMRAELDSILISDMTSDWREQVKITKKALVFPDSITEAEPALVRRQQEEYNGRLDNLS 180

Query: 205 NQLEILVRQIQQRQQEIDDLASKTTTLTTSMQLISRELELTRPLAKKGIVPEVELLKLER 264
           NQLEILVRQIQQRQQEIDDLASKTTTLTTSMQLISRELELTRPLAKKGIVPEVELLKLER
Sbjct: 181 NQLEILVRQIQQRQQEIDDLASKTTTLTTSMQLISRELELTRPLAKKGIVPEVELLKLER 240

Query: 265 AVNDAQGELNSLRLLRPKLKAALDEAILKRREAVFVYAADLRAQLNETQTRLSRMNEAQV 324
           AVNDAQGELNSLRLLRPKLKAALDEAILKRREAVFVYAADLRAQLNETQTRLSRMNEAQV
Sbjct: 241 AVNDAQGELNSLRLLRPKLKAALDEAILKRREAVFVYAADLRAQLNETQTRLSRMNEAQV 300

Query: 325 GAQDKVSKAIITSPVNGTIKTVHINTLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAF 384
           GAQDKVSKA+ITSPVNGTIKTVHINTLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAF
Sbjct: 301 GAQDKVSKAVITSPVNGTIKTVHINTLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAF 360

Query: 385 LHTGLPAVVKVTAYDFTRYGGLKGTVEHISADTSQDEEGNSFYLIKVRTEESSLIKDDGT 444
           LHTGLPAVVKVTAYDFTRYGGLKGTVEHISADTSQD+EGNSFYLIKVRTEESSLIKDDGT
Sbjct: 361 LHTGLPAVVKVTAYDFTRYGGLKGTVEHISADTSQDDEGNSFYLIKVRTEESSLIKDDGT 420

Query: 445 QMPIIPGMLTTVDVITGQRSILEYILNPILRAKDTALRER 484
           QMPIIPGMLTTVDVITGQRSILEYILNPILRAKDTALRER
Sbjct: 421 QMPIIPGMLTTVDVITGQRSILEYILNPILRAKDTALRER 460