Pairwise Alignments

Query, 726 a.a., toxin secretion ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  279 bits (713), Expect = 4e-79
 Identities = 197/689 (28%), Positives = 332/689 (48%), Gaps = 14/689 (2%)

Query: 26  LDCLVLLTEHFGNPCSSDSLAAGLPLSGAVLTPDLLPQAASRAGLAAKLSRKGLNEISPI 85
           ++ +V   + F    +S  L   L +S A LT   + +AA   GL +++++  +   + +
Sbjct: 28  IEAVVYAGQQFHKKSTSSQLKHALGVSYANLTDMEMREAADYLGLKSQITKLSIQAFNTL 87

Query: 86  LLPCILLLKDKKACILREFDLESDRAVIQLPETGGEEILTIESLETLYVGYLFLVKQEYR 145
            LP ++  +     +++  D   +      P T     L+  S E+     + L+  E  
Sbjct: 88  PLPALIEYQGGWKVMIQTDD---NGWTAYDPATDSLHTLSFTSAESTAHYKVMLIADE-- 142

Query: 146 GDMGFDVYLHDNKTHWLVQTLKDSAPIYRDALIASVLVNIFALVSPLFIMNVYDKVVPNL 205
                 V        W   ++       RD  + ++ + IFALVSP+   NV DKV+   
Sbjct: 143 ---SLSVKEVKFGLSWFAPSILRQKSQLRDVFLYAIALQIFALVSPMLFENVIDKVLVGR 199

Query: 206 AFDSLWVLAIGASIAYLFDLVMRQLRSYLIDVAGKKVDIIVSSRLFAKAIGIPLEK-RSP 264
           +  SL VLA+      + +     LR+ +      +V+  +S RL+   +G+PL   +  
Sbjct: 200 SLSSLHVLALAMLALAIAEPAYSYLRNTVFGHLASQVNAELSGRLYRHLVGLPLTYFKQR 259

Query: 265 SIGGMAKQLGEFDSIREILTSATITTLVDLPFALFFLIVIYIVAGDLAVIPVVGGMIIIG 324
             G +  ++ E   IR+ LT +T+  L+DL F   FL V++  A  L  + +  G ++I 
Sbjct: 260 QTGQIIARVREMAQIRQFLTGSTLMLLLDLIFVTVFLAVMFHYASTLTWLVI--GSLVIY 317

Query: 325 FTLY--TQPKLKAAIEEGNKFSSLKHGHLIESLSALESIKANGAEGIVQKSWQQMIGHSA 382
           F L+    P ++  +E   +  +     L E+++ +E+IK    E    + WQ+++    
Sbjct: 318 FVLWLIAGPLIRKKVESEYESDANATTFLTEAVTGIETIKTTATEHRFLEQWQRILSQQL 377

Query: 383 NWQLKSKKLSNSVSNTANFIVQFTVVCVVILGVYRVSDNLISMGGIIAAVMLSSRAIAPM 442
           N    ++K           + + T   ++  GV  V    I+ G ++A  ML+     P+
Sbjct: 378 NRSFDAQKSGLIAGQAIALVQKLTAALLLWWGVSAVLKGEITPGQLVAFNMLAGHVTQPV 437

Query: 443 AQLAGLMTRANHTASALRQLNELMLQEDEFENKGHLVSKQRLIGKINADHVGFSYPGSEK 502
            +LA +     HT  ALR++ ++ L E    +K  L S   L G I   ++ F Y     
Sbjct: 438 LRLAQIWQDFQHTLIALRRVGDI-LDEPRENSKQGLASVPELDGGIEFSNIRFRYHQDAP 496

Query: 503 PVLHPLSLTINPGERIAIIGRNGSGKSTLAKLLVGLFQPTTGSLRYDGVDSAQIHPSDLR 562
            VL  LSL I PG+ I + G +GSGKSTL +LL  L+ P  G +  DG+D A   P  LR
Sbjct: 497 EVLANLSLKIKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLR 556

Query: 563 RNFGYLPQDVTLFHGTIRDNILFGTRQVTEHQLIRAVQLSGVSQFTHLEAEGLDQQVGEG 622
           RN   + Q+  LF G++ DNI     Q ++ ++  A QL+G   F      G +Q VGE 
Sbjct: 557 RNMSVVLQESILFSGSVADNIRLCKPQASDEEIRHAAQLAGALAFIEGLPHGFNQPVGEK 616

Query: 623 GMSLSRGQRQTVALARATLNDPPVLLMDEPTASLDARAEQQFIRSMQNVSKDRTLLLITH 682
           G +LS GQRQ +ALARA L +P +LL+DE T++LD  +E   + +M  + + RT++ I H
Sbjct: 617 GAALSGGQRQRIALARALLVNPRILLLDEATSALDYNSEASIMSNMDEICRGRTVISIAH 676

Query: 683 KMHLLQLVDRIIVLERGHVVADGPKAEVL 711
           +++ ++  D I VL++G V   G   E+L
Sbjct: 677 RLNTIRHADNIFVLDKGQVAESGTHEELL 705