Pairwise Alignments

Query, 726 a.a., toxin secretion ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 585 a.a., Type I secretion system ATPase, PrtD (NCBI) from Rhodospirillum rubrum S1H

 Score =  251 bits (642), Expect = 6e-71
 Identities = 160/554 (28%), Positives = 287/554 (51%), Gaps = 10/554 (1%)

Query: 162 LVQTLKDSAPIYRDALIASVLVNIFALVSPLFIMNVYDKVVPNLAFDSLWVLAIGASIAY 221
           L + LK +   +   +  S  +N+   VSPL+++ VYD+V+ + +  +L VL + A  A 
Sbjct: 18  LQEALKKARGGFVSTMAFSFFINLLLFVSPLYMLQVYDRVLTSRSNSTLVVLTLAAVGAL 77

Query: 222 LFDLVMRQLRSYLIDVAGKKVDIIVSSRLFAKAIGIPLEKRSPSIGGMAKQLGEFDSIRE 281
           +   ++  +RS ++   G  +D  +++R+F+      + + +    G  + L + D++RE
Sbjct: 78  IVLGLIEAVRSRILVRTGALIDTELNTRVFSSVFQQAVRRPA---AGYTQALRDLDTLRE 134

Query: 282 ILTSATITTLVDLPFALFFLIVIYIVAGDLAVIPVVGGMIIIGFTLYTQPKLKAAIEEGN 341
            LT + +    D P+A  F+ + +++   L ++ + G +++    +      +  +++  
Sbjct: 135 FLTGSGLIVFCDAPWAPLFIALGFVLHPLLGLVSLFGAIVVFALAIVNNLGTRGLLKDAG 194

Query: 342 KFSSLKHGHLIESLSALESIKANGAEGIVQKSWQQMIGHSANWQLKSKKLSNSVSNTANF 401
             S   + ++  SL   E ++A G    +Q+ W +        Q K+   +++V   +  
Sbjct: 195 TVSMHANNYVSSSLRNAEVLEAMGMMSNIQRRWSERHDAVIGLQAKASDRASAVMAASKS 254

Query: 402 IVQFTVVCVVILGVYRVSDNLISMGGIIAAVMLSSRAIAPMAQLAGLMTRANHTASALRQ 461
                 V ++  G Y    + IS G +IAA ++  RA+ P+    G          A  +
Sbjct: 255 FRMGLQVAILGTGAYLAIHSEISPGTMIAASIIMGRALQPVEMAVGQWKGLVAARGAYER 314

Query: 462 LNELMLQEDEFENKGHLVSKQRLIGKINADHVGFSYPGSEKPVLHPLSLTINPGERIAII 521
           L +L+      ++    ++  R  G+++   V    PGS  P L  ++L I PGE + +I
Sbjct: 315 LTDLLANNAAGKDT---MTLPRPEGRVSLQQVVIVPPGSSVPALRGVTLDIAPGEVLGVI 371

Query: 522 GRNGSGKSTLAKLLVGLFQPTTGSLRYDGVDSAQIHPSDLRRNFGYLPQDVTLFHGTIRD 581
           G + +GKSTLA+ LVG++ P  G +R DG D       ++  + GYLPQDV LF G++ +
Sbjct: 372 GPSAAGKSTLARALVGVWPPVQGIVRLDGNDLRHWKSEEIGPHLGYLPQDVELFDGSVAE 431

Query: 582 NIL-FGTRQVTEHQLIRAVQLSGVSQFTHLEAEGLDQQVGEGGMSLSRGQRQTVALARAT 640
           NI  FG   +   ++I A + +GV        EG D ++G GG +LS GQRQ +ALARA 
Sbjct: 432 NIARFG--DIDPDKVIAAARKAGVHDMVQKLPEGYDTKIGVGGQALSGGQRQRIALARAV 489

Query: 641 LNDPPVLLMDEPTASLDARAEQQFIRSMQNV-SKDRTLLLITHKMHLLQLVDRIIVLERG 699
            NDP ++++DEP ASLDA  E   + ++  + +  +T+++ITHK  LL  VD ++VL+ G
Sbjct: 490 YNDPVLVVLDEPNASLDADGEAALMVAIDGMRAAGQTVVVITHKPTLLNAVDTVLVLKGG 549

Query: 700 HVVADGPKAEVLEK 713
            V   GP+A+VL K
Sbjct: 550 LVEMKGPRADVLSK 563