Pairwise Alignments

Query, 414 a.a., diaminopimelate decarboxylase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 417 a.a., diaminopimelate decarboxylase from Vibrio cholerae E7946 ATCC 55056

 Score =  575 bits (1483), Expect = e-169
 Identities = 286/416 (68%), Positives = 329/416 (79%), Gaps = 2/416 (0%)

Query: 1   MDHFLYQ-DNTLYAEGCRVNDLAQTYGTPLYIYSRATLERHWHAFNNAVAGHPHLVCYAV 59
           MD+F YQ D  L+AE   + DLA  YGTPLY+YSRATLERHWHAF+ +V  +PHL+CYAV
Sbjct: 1   MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAV 60

Query: 60  KANSNLAVLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGI 119
           KANSNL VLN LARLGSGFDIVS GEL RV+ AGGDP+KVVFSGVGKT AEM++AL L I
Sbjct: 61  KANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKI 120

Query: 120 YCFNVESSAELEQLNLVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAE 179
            CFNVES  EL++LN VAG LG  AP+SLR+NPDVDA THPYISTGL++NKFGI  D A 
Sbjct: 121 KCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAA 180

Query: 180 AVFARAHALPHLQVKGVDCHIGSQLTEIQPFLDAMDRMLSLIDRLAEQGIVIEHFDVGGG 239
            V+  AH+LP+L V G+DCHIGSQLT + PF+DA DR+L+LID L  +GI I H DVGGG
Sbjct: 181 QVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGG 240

Query: 240 LGVTYDDETPPHPDVYAAALLKRL-GHRKLKLIFEPGRAIAANAGIFVTEVLYLKENSDK 298
           LGV Y DE PP P  YA ALL RL  HR L+LIFEPGRAIAANAG+ VT+V +LK    K
Sbjct: 241 LGVVYRDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHK 300

Query: 299 RFAIVDGAMNDLIRPALYSAWQKIIPVTPRDDQAHVFDIVGPVCETGDFLGKDREFAIAP 358
            FAI+D AMNDLIRPALY AWQ IIP+ PR  +A  +D+VGPVCET DFLGKDR+  +  
Sbjct: 301 NFAIIDAAMNDLIRPALYQAWQDIIPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLVLQE 360

Query: 359 GDLLVVRSSGAYGFAMASNYNTRPRAAEVMVDGDKAYLVREREKLPQLWQGEQLLP 414
           GDLL VRSSGAYGF M+SNYNTRPR AEVMVDG+K YLVR+RE+L  LW  E +LP
Sbjct: 361 GDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTYLVRQREELSSLWALESVLP 416