Pairwise Alignments

Query, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., tyrosine recombinase XerC from Pseudomonas stutzeri RCH2

 Score =  253 bits (647), Expect = 3e-72
 Identities = 144/298 (48%), Positives = 197/298 (66%), Gaps = 14/298 (4%)

Query: 9   LQQFEAYMQSERQLSAHTVRNYLYELQR-----GRELLPEGIDLLNVGREHWQQVLAKLH 63
           L  +  +++S RQLS H++  Y  +L +      RE +    D   +   H +Q++A+LH
Sbjct: 5   LDAYFEHLRSARQLSGHSLEGYRRDLNKLLAHCEREQIA---DWRGLQGRHLRQLIAELH 61

Query: 64  RKGLSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTHLLE 123
           R+G S RSL+  LS+V+    +L + G  + +PA GLSAPK  + LPK +D D    LL 
Sbjct: 62  RQGQSSRSLARLLSSVRGLYRYLNQEGICQHDPAAGLSAPKGERRLPKLLDTDRAMQLL- 120

Query: 124 IDG---NDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPV 180
            DG   +D + LRD+A++ELFYSSGLRL+EL  L+L  +      VRVLGKGNK R +PV
Sbjct: 121 -DGGVEDDFIALRDQAMLELFYSSGLRLSELVGLNLDQLDLPAGLVRVLGKGNKVRELPV 179

Query: 181 GRYAIDAISAWLECRRQIPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHK 240
           GR A +A+ AWL  R      D A+F+ ++G+RL  R++Q R+ + G  + L   +HPH 
Sbjct: 180 GRKAREALQAWLPIRALANPADGAVFIGQQGRRLGARAVQMRVRQAGVRE-LGQHLHPHM 238

Query: 241 LRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRAKKQQD 298
           LRHSFA+H+LESS DLR+VQELLGH ++ TTQIYT LDFQHLAKVYD AHPRAK++QD
Sbjct: 239 LRHSFASHLLESSQDLRSVQELLGHADIGTTQIYTHLDFQHLAKVYDQAHPRAKRKQD 296