Pairwise Alignments

Query, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

 Score =  295 bits (754), Expect = 1e-84
 Identities = 148/297 (49%), Positives = 213/297 (71%), Gaps = 15/297 (5%)

Query: 9   LQQFEAYMQSERQLSAHTVRNYLYELQRGRELLPEGIDLLNVGREHW--------QQVLA 60
           L++F AY+ +E+ LS +T RNY  +L+   + L      + VG  HW        +Q++ 
Sbjct: 17  LERFYAYLHTEKGLSLYTQRNYKQQLETMTQYL------VQVGLTHWTQLDSAWVRQLVM 70

Query: 61  KLHRKGLSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTH 120
           +  R+G+   S++  LS+++ + +FL+  G ++ NPAKG+SAP++ + LPKN+DVD +  
Sbjct: 71  QGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQ 130

Query: 121 LLEIDGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPV 180
           LLE+  +DPL++RD+AIMEL Y +GLRLAEL ++D+  V   + E+RV+GKGNKER V  
Sbjct: 131 LLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVWF 190

Query: 181 GRYAIDAISAWLECRRQIP-CEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPH 239
              A + +  WL+ R Q+    + ALFV++ G R+SHRS+Q RM++WGQ+QA++  + PH
Sbjct: 191 AGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPH 250

Query: 240 KLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRAKKQ 296
           KLRHSFATHMLESS +LRAVQELLGHEN++TTQIYT LDFQHLA+VYD AHPRA+K+
Sbjct: 251 KLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307