Pairwise Alignments

Query, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 296 a.a., integrase/recombinase XerC (RefSeq) from Shewanella amazonensis SB2B

 Score =  379 bits (972), Expect = e-110
 Identities = 195/300 (65%), Positives = 233/300 (77%), Gaps = 17/300 (5%)

Query: 7   SYLQQFEAYMQSERQLSAHTVRNYLYELQRGRELLPEGIDLLNVGREHWQQV-------- 58
           S+L++F  Y+ +ERQLS  TVRNY +EL+R   LL         G+  WQQ+        
Sbjct: 6   SWLERFTRYLATERQLSPMTVRNYRFELERADTLL---------GQRSWQQLSRQDLSGL 56

Query: 59  LAKLHRKGLSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSL 118
           +A+LHR+GLSPRSLSL  SA+KQ+G+FLL+ G I+ NPA  LSAPKQ+K LPKN+D DS+
Sbjct: 57  MARLHRQGLSPRSLSLTASALKQFGQFLLKEGLIDTNPAATLSAPKQSKTLPKNLDPDSV 116

Query: 119 THLLEIDGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIV 178
            HLL+I   D L LRDKAIMELFYS GLRLAELAALD+  +  + REVRV+GKG+KERI+
Sbjct: 117 NHLLDIPPEDGLALRDKAIMELFYSCGLRLAELAALDVKDLDRESREVRVIGKGSKERIL 176

Query: 179 PVGRYAIDAISAWLECRRQIPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHP 238
           PVG  A+ AI  WL+ R Q+PC+D+ALFV+ +G RLSHRSIQARM KW Q Q LS+ VHP
Sbjct: 177 PVGSVALAAIGDWLKVRNQMPCQDDALFVSSRGSRLSHRSIQARMEKWAQIQGLSVGVHP 236

Query: 239 HKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRAKKQQD 298
           HKLRHSFATHMLESS DLRAVQELLGH NL+TTQIYTSLDFQHLAKVYD AHPRA+K+ D
Sbjct: 237 HKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTSLDFQHLAKVYDGAHPRARKKGD 296