Pairwise Alignments

Query, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 307 a.a., tyrosine recombinase XerC from Burkholderia phytofirmans PsJN

 Score =  241 bits (616), Expect = 1e-68
 Identities = 140/296 (47%), Positives = 192/296 (64%), Gaps = 18/296 (6%)

Query: 16  MQSERQLSAHTVRNYLYELQRGRELLPEGIDLLNVGREHWQQVLAKLHRKGLSPRSLSLW 75
           ++ ER+LSAHT+R Y +EL+  ++L  +G  L ++     +  +++ H  GL+ RS+S  
Sbjct: 14  LEHERRLSAHTLRGYAHELEELKQLA-KGRPLESLTPVDIRGAVSRAHAGGLTARSISHR 72

Query: 76  LSAVKQWGEFLLRAGAIEL--NPAKGLSAPKQAKPLPKNIDVDSLTHLLEID-GNDPLTL 132
           LSA + +  +L  AG ++L  NP   + APKQAKPLPK + VD  T L+E      P  L
Sbjct: 73  LSAWRAFYRWL--AGRVDLAANPVATVRAPKQAKPLPKALSVDDATRLMESPPAASPEGL 130

Query: 133 RDKAIMELFYSSGLRLAELAALDLSS-----------VQYDQREVRVLGKGNKERIVPVG 181
           RD A++ELFYSSGLRLAEL  LD              ++ D  EV VLGKGN+ R+VPVG
Sbjct: 131 RDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLDSAEVEVLGKGNRRRVVPVG 190

Query: 182 RYAIDAISAWLECRRQIPCED-NALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHK 240
             A++A+ AWL  R Q+   D + LF++ +G RLS   ++ R+ +      +   VHPH 
Sbjct: 191 SKALEALGAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVAGIPANVHPHV 250

Query: 241 LRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRAKKQ 296
           LRHSFATH+L+SS DLRAVQELLGH +++ TQ+YT+LDFQHLA VYD AHPRAKK+
Sbjct: 251 LRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAKKR 306