Pairwise Alignments

Query, 401 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 419 a.a., nucleoside permease (cytidine, inosine, uridine, or thymidine) (from data) from Shewanella sp. ANA-3

 Score =  398 bits (1023), Expect = e-115
 Identities = 201/418 (48%), Positives = 292/418 (69%), Gaps = 20/418 (4%)

Query: 1   MIQSILGIFVLLGVGLLFSDNRSLISWRAVIGAFGIIIALAFFVLATEIGADVLLAVSNT 60
           ++ S++G+ VLL +G L S+N+  I+ R V GA  I  A   FVL   +G D+L +VS+ 
Sbjct: 3   ILMSLVGVVVLLAIGFLLSNNKKAINLRTVGGALAIQAAFGGFVLYVPVGKDILKSVSDA 62

Query: 61  VGKVFGYGTEGIKFAFGSLVNFSVEGIGFVWALQVLPQIIFTAALTSLLYYLGIMQWFVL 120
           V  V GY   GI F FG L NF    +GF++A+ VLP I+F ++L ++LYYLGIMQW + 
Sbjct: 63  VSSVIGYAQNGIGFLFGDLANFK---LGFIFAVNVLPVIVFFSSLIAVLYYLGIMQWIIR 119

Query: 121 IIGGSLQKVLGTSRAESMNAAGNIILGQTEAPLLIKPYHRVLTRAQIFAVMVGGLSSIAG 180
           IIGG LQK LGTSR ESM+A  NI +GQTEAPL+++P+   +T++++FA+MVGGL+SIAG
Sbjct: 120 IIGGGLQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAIMVGGLASIAG 179

Query: 181 SILAGLAGMGVALNYLIMACFMSAPAGLMFAKLLIPETEPTVNEVPELPDD-EKPSSFID 239
           S+LAG A MGV + YL+ A FM+AP GL+ AKL+ PETE   N++ ELP+D +KP++ +D
Sbjct: 180 SVLAGYAQMGVPIEYLVAASFMAAPGGLLMAKLMHPETEVAKNDMDELPEDPDKPANVLD 239

Query: 240 AIAKGAIAGMGIAAIVGAVIIACIGLMALLNGGLGAIGELFGMPTLTVDMILGTLFAPVA 299
           A A GA +GM +A  VGA+++A +GL+A++NG +G +G  FG+  LT+++ILG +F P+A
Sbjct: 240 AAAAGASSGMHLALNVGAMLLAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLA 299

Query: 300 WLIGIPWVEASTAGAFLGQKIAMNEFVAFANMG----------------NVELSARSNAI 343
           +LIG+PW EA  AG+F+GQKI +NEFVA+ N                   + ++ R+ AI
Sbjct: 300 FLIGVPWNEALVAGSFIGQKIVVNEFVAYLNFAPYLKDIADGGMIVADTGLAMTDRTKAI 359

Query: 344 MTIALCGFANIGSVAMVCGALSKMIPQRAGLIGQLGMKVLLAATLANLMNAAIVSLFI 401
           ++ ALCGFAN+ S+A++ G L  M P R   + +LG++ ++A +LANLM+A I  LF+
Sbjct: 360 ISFALCGFANLSSIAILLGGLGAMAPNRRHDLAKLGIRAVIAGSLANLMSATIAGLFL 417