Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 255 a.a., flagellar motor protein PomA (RefSeq) from Shewanella amazonensis SB2B

 Score =  124 bits (312), Expect = 1e-33
 Identities = 68/242 (28%), Positives = 131/242 (54%), Gaps = 5/242 (2%)

Query: 2   SFIGVIVALVFILVGNLIEGGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMK-RF 60
           + IG++ A  F+++  ++ GG  +  +D+P+  IV GG++   + +F       ++K   
Sbjct: 5   TLIGLLGAFAFVVMA-MVTGGGLAIFVDIPSVFIVFGGSLFVVMMKFNLKQFFGAVKIAA 63

Query: 61  KWLIFPLRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQIDDPFLHKGLELLVDGYEKDN 120
           K  +F +     E  E  + +A   RKGG L++E+   QI + F+ K +++LVDG++ D 
Sbjct: 64  KAFMFKIDKP-EELIEQSVAMADAARKGGFLALEEA--QISNSFMQKAVDMLVDGHDGDV 120

Query: 121 IVEILEKEIEFEQHGIEQTVKVYEAMGGYCPTMGIVGAVFGLIHAMGLLDAPDKLGGAIA 180
           + E LEK+I   +      + ++ A G   P MG++G + GL+  +  +D P  +G A+A
Sbjct: 121 VREALEKDIALTEERHRTGIGIFRAFGDVAPAMGMIGTLIGLVAMLSNMDDPKSIGPAMA 180

Query: 181 VAFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFKEMTLTGITGIADGESPQRLQAQLNP 240
           VA + T+YG   AN++ +P  ++      +  L + + +  +  I DG++P+ ++  L  
Sbjct: 181 VALLTTLYGAMLANMVAIPVADKLSLRMSEEMLNRNLIMDAVLAIQDGQNPRVIEGFLKN 240

Query: 241 YL 242
           YL
Sbjct: 241 YL 242