Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 285 a.a., motA, chemotaxis (motility protein A (NCBI) from Rhodospirillum rubrum S1H

 Score = 75.5 bits (184), Expect = 1e-18
 Identities = 66/251 (26%), Positives = 106/251 (42%), Gaps = 22/251 (8%)

Query: 4   IGVIVALVFILVGNLIEGGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMKRFKWL 63
           IG I+ +  ++ G    GGH + L     F+I++G ++GA +   P +V+  ++K    +
Sbjct: 5   IGAIIVIASVIGGYAAPGGHLAVLWQPFEFIIILGASLGAFLIGNPKTVLTGTLKSLGPM 64

Query: 64  I---FPLRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQIDD-----------------P 103
           +      +    E    L  +    +  G L++E  I++ +D                  
Sbjct: 65  MKGPKHNKASYLELLSLLYTLFRLAKTKGDLALESHIEKPEDSPIFQKFPAFSKDHHNVE 124

Query: 104 FLHKGLELLVDGYEKDNIVE-ILEKEIEFEQHGIEQTVKVYEAMGGYCPTMGIVGAVFGL 162
           FL   L LL  G    + VE I+E EIE               M    P +GIV AV G+
Sbjct: 125 FLCDYLRLLTLGTNNAHEVETIIEAEIESHHVEAHNIPSAMVNMADGMPALGIVAAVLGV 184

Query: 163 IHAMG-LLDAPDKLGGAIAVAFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFKEMTLTG 221
           IH MG + + P+ LG  I  A + T  GV  +   F PFG   +A  +  + +     +G
Sbjct: 185 IHTMGSITEPPEVLGHLIGAALVGTFMGVLLSYGFFAPFGRAIEAVFNNQTQYLHCMKSG 244

Query: 222 ITGIADGESPQ 232
           I     G +PQ
Sbjct: 245 ILAHMQGYAPQ 255