Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 251 a.a., MotA/TolQ/ExbB proton channel (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 92.8 bits (229), Expect = 6e-24
 Identities = 65/244 (26%), Positives = 119/244 (48%), Gaps = 9/244 (3%)

Query: 2   SFIGVIVALVFILVGNLIEGGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMKRFK 61
           +  G+IV L  +  G ++ GG     +DL AFMIV+GG++ A    FP + ++ + +   
Sbjct: 5   TLFGLIVGLAMVF-GAIMGGGSIWLFVDLHAFMIVVGGSLAAICINFPLNQVLQAFRAAS 63

Query: 62  WLIFPLRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQIDDPFLHKGLELLVDGYEKDNI 121
             +        +    ++ IA   R+ G++++E      +D  L K   L+ D    + I
Sbjct: 64  KTLMMREFSDADVVNSMVRIAELSRREGIMALEHV--HTNDAVLKKACMLIADNAAPELI 121

Query: 122 VEILEKEIEF--EQHGIEQTVKVYEAMGGYCPTMGIVGAVFGLIHAMGLLDAPDKLGGAI 179
            + L  EI    ++H + Q V  ++ +G   P++G+ G + GL+     LD P  +G A+
Sbjct: 122 KDSLLIEISSLCKRHSVAQNV--FKRLGLLAPSLGLTGTLIGLVQMFANLDNPKSIGPAM 179

Query: 180 AVAFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFK-EMTLTGITGIADGESPQRLQAQL 238
           +VA I T YG   +N+I  P   +  A   QL + + E+   G   I +  +P+ +  +L
Sbjct: 180 SVAMICTFYGAMLSNLILTPIAGKLAA-RTQLEVHRLEIIFEGAKCILENNNPRLVYEKL 238

Query: 239 NPYL 242
           + +L
Sbjct: 239 SSFL 242