Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 252 a.a., MotA/TolQ/ExbB proton channel (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  150 bits (379), Expect = 2e-41
 Identities = 87/241 (36%), Positives = 137/241 (56%), Gaps = 7/241 (2%)

Query: 4   IGVIVALVFILVGNLIE-GGHPSALLDLPAFMIVIGGTIGATVAQFPFSVI--IASMKRF 60
           +G++++  F L+G  +  GG+P   +D  A +IV+GGT+GA +  +P  V   + S+ R 
Sbjct: 7   LGILIS--FGLIGTALSMGGNPLFFVDSAALLIVLGGTLGAALVHYPLPVALRVLSITRK 64

Query: 61  KWLIFPLRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQIDDPFLHKGLELLVDGYEKDN 120
            +     R DL    +  +E A   R+ GLLS+E  +  +DDPFL KGL+L +DG E D 
Sbjct: 65  AFATRLHRIDLV--IDQFMEFAHRARREGLLSLEPAVRNLDDPFLRKGLQLTIDGLEPDA 122

Query: 121 IVEILEKEIEFEQHGIEQTVKVYEAMGGYCPTMGIVGAVFGLIHAMGLLDAPDKLGGAIA 180
           I EI+E EI   +      V ++ A+  Y P +G+VG + GL+  +  ++ P  +G A+A
Sbjct: 123 IREIMESEIAALETRHSMGVDIFNALASYAPALGLVGTLIGLVQMLRSMNDPSAIGPAMA 182

Query: 181 VAFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFKEMTLTGITGIADGESPQRLQAQLNP 240
           VA I T YGV  AN++FLP   + +  + +     EM L GI  IA GE+P+ +  +L+ 
Sbjct: 183 VALITTFYGVVLANLVFLPLAGKLRHRSKEEVQLMEMQLEGILAIARGENPRIILEKLSC 242

Query: 241 Y 241
           Y
Sbjct: 243 Y 243