Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 251 a.a., MotA/TolQ/ExbB proton channel (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  101 bits (252), Expect = 1e-26
 Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 3/241 (1%)

Query: 2   SFIGVIVALVFILVGNLIEGGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMKRFK 61
           +F GV+     + +  ++ G  P    D+ + MIV GGT  + +  FP   ++ +++   
Sbjct: 5   TFFGVLTGFGLV-ISAILMGPEPGKFFDIASVMIVFGGTAASILVTFPLEEVMQAVRGGC 63

Query: 62  WLIFPLRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQIDDPFLHKGLELLVDGYEKDNI 121
                 R    +    ++ IA   R+ GL+++E+   Q ++  + K  +L+ D  +   I
Sbjct: 64  KAFGSKRVQAQDVVNTMVRIAEISRREGLIALENV--QTENALIKKACQLIADNADPGLI 121

Query: 122 VEILEKEIEFEQHGIEQTVKVYEAMGGYCPTMGIVGAVFGLIHAMGLLDAPDKLGGAIAV 181
              +  EI   +     ++ V+  + GY P  G++G + GL+  +  L+ P  +G A+AV
Sbjct: 122 RGTVAIEIASMKRRHNVSIGVFNRLAGYSPAYGMIGTLIGLVQMLATLNDPSSIGPAMAV 181

Query: 182 AFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFKEMTLTGITGIADGESPQRLQAQLNPY 241
           A I T YG   +N++FLP   + KA + Q  L   +   G   I    +P+ +  +L+ +
Sbjct: 182 AIITTFYGALLSNLLFLPIAGKLKARSMQEELHLLVIFEGAKCILKNNNPRLVYEKLSSF 241

Query: 242 L 242
           L
Sbjct: 242 L 242