Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 250 a.a., chemotaxis protein PomA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  125 bits (315), Expect = 6e-34
 Identities = 69/245 (28%), Positives = 131/245 (53%), Gaps = 11/245 (4%)

Query: 2   SFIGVIVALVFILVGNLIEGGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASM---- 57
           + IG++     I++  L+ GG     +D+P+ +IVIGGTI A +  FP  V++ SM    
Sbjct: 5   TLIGIVGGFALIIIAILL-GGSLMPFVDIPSVVIVIGGTITAILVMFPLEVVLGSMGIAM 63

Query: 58  KRFKWLIFPLRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQIDDPFLHKGLELLVDGYE 117
           + FK+     + +  +  E + ++A   R+  L+++E     + D FL KG+ ++ DG  
Sbjct: 64  RTFKFN----KENPVQTVEDICKLADTARRESLVALEKV--PLQDEFLKKGIRMVADGSS 117

Query: 118 KDNIVEILEKEIEFEQHGIEQTVKVYEAMGGYCPTMGIVGAVFGLIHAMGLLDAPDKLGG 177
           +D +  +L+ EI F +    +   V++ +G   P  G++G + GL++ +  L  P  +G 
Sbjct: 118 QDQVTALLDAEINFMKQRHRRGQAVFKGLGSAAPAFGMIGTLVGLVNMLQNLSDPASIGP 177

Query: 178 AIAVAFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFKEMTLTGITGIADGESPQRLQAQ 237
           A+AVA + T YG   +N++FLP   + +  +       ++ + G+  I +GE PQ ++ +
Sbjct: 178 AMAVALLTTFYGAVLSNLMFLPMAKKLEERSFDEQFMMQLKMEGVLSILNGEHPQLVKEK 237

Query: 238 LNPYL 242
           L  +L
Sbjct: 238 LMAFL 242