Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 289 a.a., flagellar motor protein MotA from Burkholderia phytofirmans PsJN

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 34/254 (13%)

Query: 6   VIVALVFILV-GNLIE-----GGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMKR 59
           + VA+ ++LV G++I      GGH  ALL     + + G  IGA V   P S +  ++K 
Sbjct: 1   MFVAIGWLLVIGSVIGSFVGVGGHLPALLQPFELLCIFGAAIGAFVVSNPTSTLKKTIKA 60

Query: 60  ----FKWLIFPLRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQIDDPFL---------- 105
               FK   +     L E    L E+    RK G++S+E  +   ++  +          
Sbjct: 61  IPSCFKGGGYTKEKYL-ELIALLYELLQKARKEGMMSLEADVGAPEESVIFQKYSHVLED 119

Query: 106 HKGLELLVDGYE-----KDNIVEILE-KEIEFEQHGIEQTV--KVYEAMGGYCPTMGIVG 157
           H  L+ +VD          N++E+ +  + E   H  E +V     + M    P  GIV 
Sbjct: 120 HHLLDFIVDYLRMMSGGNVNVLEVQDLMDEELATHHAEASVAANAIQKMADGLPAFGIVA 179

Query: 158 AVFGLIHAMGLLDAPDK-LGGAIAVAFIATIYGVAAANIIFLPFGN----RYKAFAHQLS 212
           AV G++H MG + AP   LG  IA A + T  G+  A     P  +    + +A A    
Sbjct: 180 AVMGVVHTMGSVGAPPAVLGEMIAGALVGTFLGILLAYGFIGPVADLLNAKGRAEAKPYQ 239

Query: 213 LFKEMTLTGITGIA 226
             K + L  ++G A
Sbjct: 240 CVKAVLLASLSGYA 253